View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_48 (Length: 405)
Name: NF1376_high_48
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 31078532 - 31078321
Alignment:
| Q |
181 |
gcaggaaccaccctaaactgcctcatgatccctgcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078532 |
gcaggaaccaccctaaactgcctcatgatccctgcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaa |
31078433 |
T |
|
| Q |
281 |
aaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtcc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078432 |
aaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtcc |
31078333 |
T |
|
| Q |
381 |
ccatattttctc |
392 |
Q |
| |
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|||||||||||| |
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|
| T |
31078332 |
ccatattttctc |
31078321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 31127850 - 31127639
Alignment:
| Q |
181 |
gcaggaaccaccctaaactgcctcatgatccctgcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaa |
280 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
31127850 |
gcaggaaccaccctaaactgcctcatgatcccggcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacccttggcccagcctgaa |
31127751 |
T |
|
| Q |
281 |
aaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtcc |
380 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
31127750 |
aaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgggtcc |
31127651 |
T |
|
| Q |
381 |
ccatattttctc |
392 |
Q |
| |
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|||||||||||| |
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| T |
31127650 |
ccatattttctc |
31127639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 31132504 - 31132347
Alignment:
| Q |
235 |
aagaacgccatttcctttcctaaacacaccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcat |
334 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||| ||||| || ||||| ||| |
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| T |
31132504 |
aagaacgccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcag |
31132405 |
T |
|
| Q |
335 |
cttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctc |
392 |
Q |
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|| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |
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|
| T |
31132404 |
ctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttctc |
31132347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36675343 - 36675261
Alignment:
| Q |
1 |
agtattgttaatttttacgataaaattgaaaaatgcgggaagagatttagaaataatcttacaatggagacaagaatatgcag |
83 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
36675343 |
agtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcag |
36675261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36685425 - 36685343
Alignment:
| Q |
1 |
agtattgttaatttttacgataaaattgaaaaatgcgggaagagatttagaaataatcttacaatggagacaagaatatgcag |
83 |
Q |
| |
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|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
36685425 |
agtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcag |
36685343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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