View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_50 (Length: 399)
Name: NF1376_high_50
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 39747598 - 39747322
Alignment:
| Q |
11 |
cacagagtctaggaatgtcagaatttgtcaaagccaccaagagtggataatctggcctcaacgactctttttacagttttgtagaagaagaaaaccaaca |
110 |
Q |
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| T |
39747598 |
cacagagtctaggaatgtcagaatttgtcaaagccaccaagagtggataatttggcctcgacgactctttttacagttttgtagaagaagaaaaccaaca |
39747499 |
T |
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| Q |
111 |
caactataatataggaggcatgataatagagggggagtaatgtaatgctgtttattttcatgtagaatgattctttgacttggttgatattgatgattat |
210 |
Q |
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| T |
39747498 |
caactataatataggaggcatgataatagagggggagtaatgtaatgctgtttattttcatgtagaatgattcttt-----------tattgatgattat |
39747410 |
T |
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| Q |
211 |
gttgatcattttgaagatggtgaataacttgaactacttgaagaagttcatttctttcacctaaaagttgacttgtattaagtgaaat |
298 |
Q |
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| T |
39747409 |
ggtgatcattttgaagatggtgaataacttgaactacttgaagaagttcatttctttcacctaaaagttgacttgtattaagtgaaat |
39747322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 39747277 - 39747241
Alignment:
| Q |
295 |
aaatacaataaagagcacatgttagaaaacacaatgg |
331 |
Q |
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| T |
39747277 |
aaatacaataaagagcacatgttagaaaacacaatgg |
39747241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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