View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_51 (Length: 399)
Name: NF1376_high_51
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 77 - 267
Target Start/End: Original strand, 32438021 - 32438206
Alignment:
| Q |
77 |
acaaggaacagtaagtatagatgattttactatacacgtgacnnnnnnnnnnnnactcaggttcctagaggaaatgaaacttatcaacctgcagttcaat |
176 |
Q |
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| T |
32438021 |
acaaggagcagtaagtatagatgattttactatacacgtaacttttttta----actcatgttcctagaggaaat-aaacttatcaatccggagttcaat |
32438115 |
T |
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| Q |
177 |
tgataggtatataaagtgtgattaagaattgtttcccccaataatcaaatttagcttttcccaaacgatttatcttcaagtgaagtttttg |
267 |
Q |
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| T |
32438116 |
tgataactatataaagtgtgattaagaattatttcacccaataatcaaatttagcttttcccatacgatttatcttcaagtgaagtttttg |
32438206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 32438290 - 32438344
Alignment:
| Q |
341 |
gcggtggttgcttcttgcatttcttccgacgtgaattatattagccatttcaaaa |
395 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
32438290 |
gcggtggttgcttcttgcatttcttccgacgagaataatattagccatttcaaaa |
32438344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 39974259 - 39974210
Alignment:
| Q |
6 |
aataaataccatgccaccagacacaatgtaatgtaattcttattttcatt |
55 |
Q |
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| T |
39974259 |
aataaataccatgccactagacacaatgtaatgtaattcttattttcatt |
39974210 |
T |
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