View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_54 (Length: 392)
Name: NF1376_high_54
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 31858110 - 31857762
Alignment:
| Q |
15 |
acatgttagtgtcgacacatgtatttacattcaatcatttttaccattgatctaaaacaactattataataattaaacatattcttgcatacctttgcac |
114 |
Q |
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| T |
31858110 |
acatgttagtgtggatacatgtatttacattcaatcaattttaccattgatctaaaacaactattataat---taaacatattcttgcatacctttgcac |
31858014 |
T |
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| Q |
115 |
tgactaacaggtggagtttgaaccttacaagcagaagggagagaaagagcaagtgtttgatttatagtgattccaaaagaggaaccaccaccattaagga |
214 |
Q |
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| T |
31858013 |
tgactaacaggtggagtttgaaccttacaagcagaagggagagagagagcaagtgtttgatttatagtgattccaaaagaggaaccaccaccattaagga |
31857914 |
T |
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| Q |
215 |
gggagcatagacactgaggagaagattggactacacttgaaagttgtgtgcaacatgaagttgatggatttgaagaactccccattatgtagtttagaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31857913 |
gggagcatagacactgaggagaagattggactacacttgaaagttgtgagcaacatgaagatgatggatttgaagaactccccattatgtagtttagaca |
31857814 |
T |
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| Q |
315 |
agggctcaagctagtgagtgttgatgtacaacctgattgagcttcattttga |
366 |
Q |
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| T |
31857813 |
agggctcaagctagtgatcgttgatgtacaacctgattgagcttcattttga |
31857762 |
T |
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