View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_56 (Length: 388)
Name: NF1376_high_56
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 7970424 - 7970044
Alignment:
| Q |
1 |
tgtagccaacttcatttgattggataagccttggtcagttggttgttatcgggagaagggtctgtatttagtctataaaagtacttggaacatgattacc |
100 |
Q |
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| T |
7970424 |
tgtagccaactccatttgattggataagccgtggtcagttggttgttgtcgggagaagggtctgtatttagtctataaaagtatttggaacatgattacc |
7970325 |
T |
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| Q |
101 |
tccaaaggaagaaacctacgaaaactcaataaaaattataggatattggataatataggttttag---------acaaaaaagctatattatattgtgct |
191 |
Q |
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| T |
7970324 |
tccgagggaagaaacctacgaaaactcaataaaaattataggatattggataatatagcttttagaaagaaaaaaaaaaaaagctatattatattgtgct |
7970225 |
T |
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| Q |
192 |
ttgagtttactttattccttgttgaattatggtaacagattttatgt--catactatggttattataatttataagggcttaattaagttgttttgctat |
289 |
Q |
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| T |
7970224 |
ttgagtttactttattccttgttgaattatggtaacagattttatgtgatatactatggtta-------ttataagggcttaattaagttgttttgctat |
7970132 |
T |
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| Q |
290 |
gtgtttcgatacagtgggaagaagcctgaatatcttggagttcagaaaaactcatcagcattggctctgtgtccagcaactaagaatt |
377 |
Q |
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| T |
7970131 |
gtgtttcgatacagtgggaagaagcctgaatatcttggagttcagaaaaactcatcagcattggctctgtgtccagcaactaagaatt |
7970044 |
T |
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