View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_high_61 (Length: 362)

Name: NF1376_high_61
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_high_61
NF1376_high_61
[»] chr6 (5 HSPs)
chr6 (1-351)||(34848103-34848457)
chr6 (246-294)||(29892972-29893020)
chr6 (249-296)||(6708103-6708150)
chr6 (249-296)||(31079621-31079668)
chr6 (240-296)||(8356958-8357014)
[»] chr8 (4 HSPs)
chr8 (4-72)||(42729514-42729582)
chr8 (249-296)||(28876628-28876675)
chr8 (240-296)||(37668582-37668638)
chr8 (240-296)||(43771766-43771822)
[»] chr2 (5 HSPs)
chr2 (249-296)||(6124182-6124229)
chr2 (240-294)||(43214572-43214626)
chr2 (240-296)||(2319275-2319331)
chr2 (240-296)||(6497711-6497767)
chr2 (240-296)||(35342317-35342373)
[»] chr7 (3 HSPs)
chr7 (249-295)||(27398110-27398156)
chr7 (236-289)||(49015135-49015188)
chr7 (240-296)||(11058349-11058405)
[»] chr5 (5 HSPs)
chr5 (249-294)||(9792328-9792373)
chr5 (240-296)||(41392774-41392830)
chr5 (249-296)||(1639844-1639891)
chr5 (249-278)||(11694228-11694257)
chr5 (257-294)||(32624894-32624931)
[»] chr1 (6 HSPs)
chr1 (240-296)||(36367754-36367810)
chr1 (249-296)||(3426857-3426904)
chr1 (257-296)||(9528901-9528940)
chr1 (249-296)||(38948741-38948788)
chr1 (257-294)||(9092547-9092584)
chr1 (248-296)||(28659362-28659410)
[»] scaffold0112 (1 HSPs)
scaffold0112 (249-296)||(42127-42174)
[»] chr4 (8 HSPs)
chr4 (249-296)||(5325783-5325830)
chr4 (249-296)||(38492321-38492368)
chr4 (249-296)||(52122931-52122978)
chr4 (250-295)||(3403638-3403683)
chr4 (249-294)||(41145621-41145666)
chr4 (249-289)||(2586345-2586385)
chr4 (240-296)||(42472631-42472687)
chr4 (240-296)||(55901201-55901257)
[»] chr3 (2 HSPs)
chr3 (249-296)||(37996873-37996920)
chr3 (249-296)||(47642026-47642073)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 34848457 - 34848103
Alignment:
Q  1 caatctccttttccaagcttctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactcctaatgaataaaataacaaaatatcnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  34848457 caatctccttttccaagcttctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactcctaatgaataaaataacaaaatatcaaaaa 34848358  T
Q  101 nn-cttgttagatgttaatttcatttaacattctaaatcaataatttaaaattatagatgaaccacctagaattgattgagaacaaagaaaataaatagt 199  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848357 aaacttgttagatgttaatttcatttaacattctaaatcaataatttaaaattatagatgaaccacctagaattgattgagaacaaagaaaataaatagt 34848258  T
Q  200 a---ataaagtgtcttcataataaatacatcataggctttctttgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||| |||| |    
T  34848257 agtaataaagtgtcttcataataaatacatcataggctttctttgaaatccatatactttaaaatggatgacgcactgtatcttatgtgtatcctgcatc 34848158  T
Q  297 tgatgtcttgataaaatttgaatctaaattaaaaattcacaaatatattagaata 351  Q
     |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  34848157 cgatgtcttgataaaatttgaatctaaattaaaaatttacaaatgtattacaata 34848103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 29892972 - 29893020
Alignment:
Q  246 ccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 294  Q
    |||||||||||||||||||||| |||||||||||| || ||||| ||||    
T  29892972 ccagatactttaaaatggatgatgtactgtatcccctgcgtatcctgca 29893020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 6708150 - 6708103
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||||||||||||||||||| || |||||||| |||||||| ||||||    
T  6708150 gatactttaaaatggatgacatattgtatcccctgtgtatcatgcacc 6708103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 31079621 - 31079668
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  31079621 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 31079668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 8356958 - 8357014
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  8356958 tgaagtcctgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 8357014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 42729514 - 42729582
Alignment:
Q  4 tctccttttccaagcttctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactcct 72  Q
    ||||||||||| |||||||| | ||||||||||||  |||| |||||||||||||||||||||||||||    
T  42729514 tctccttttcctagcttctctaatccaacaaggaacattctgtgctcttcttctgtccatggaactcct 42729582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 28876675 - 28876628
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  28876675 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 28876628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 37668582 - 37668638
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||| || ||||||| |||||||||||||||| |||| || || ||||||||||||    
T  37668582 tgaaaccccgatacttcaaaatggatgacgtaccgtattccctgcgtatcttgcacc 37668638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 43771822 - 43771766
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||| || ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  43771822 tgaaaccccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 43771766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 6124182 - 6124229
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  6124182 gatactttaaaatggatgacgtattgtatcccctgtgtatcctgcacc 6124229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 43214572 - 43214626
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 294  Q
    |||| ||||||||||| |||||||||||||||  |||||||||||||||| ||||    
T  43214572 tgaagtccagatacttcaaaatggatgacgtatcgtatcccatgtgtatcctgca 43214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 2319275 - 2319331
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||| || ||||||| |||||||||||||||  ||||||| || ||||||||||||    
T  2319275 tgaaaccccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcttgcacc 2319331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 6497767 - 6497711
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  6497767 tgaagtcccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 6497711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 35342317 - 35342373
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  35342317 tgaagtcccgatacttcaaaatggatgacgtaccgtatcccttgcgtatcctgcacc 35342373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 27398156 - 27398110
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 295  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||    
T  27398156 gatactttaaaatggatgacgtactgtatcccctgcgtatcctgcac 27398110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 49015188 - 49015135
Alignment:
Q  236 tctttgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatc 289  Q
    ||||||||||| |||||||| |||||||||||| ||| ||||| ||||||||||    
T  49015188 tctttgaaatctagatacttcaaaatggatgacataccgtatctcatgtgtatc 49015135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 11058349 - 11058405
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||||| ||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  11058349 tgaagtccaggtacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 11058405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 9792328 - 9792373
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 294  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  9792328 gatactttaaaatggatgacgtaccgtatcccctgtgtatcctgca 9792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 41392830 - 41392774
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||||||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  41392830 tgaagtccagatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 41392774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 1639891 - 1639844
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  1639891 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 1639844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 11694228 - 11694257
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatc 278  Q
    ||||||||||||||||||||||||||||||    
T  11694228 gatactttaaaatggatgacgtactgtatc 11694257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 32624894 - 32624931
Alignment:
Q  257 aaaatggatgacgtactgtatcccatgtgtatcttgca 294  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  32624894 aaaatggatgacgtaccgtatcccctgtgtatcttgca 32624931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 36367810 - 36367754
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||| ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  36367810 tgaagtcctgatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 36367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 3426857 - 3426904
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  3426857 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 3426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 9528940 - 9528901
Alignment:
Q  257 aaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  9528940 aaaatggatgacgtattgtatcccttgtgtatcttgcacc 9528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 38948741 - 38948788
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  38948741 gatactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 38948788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 9092584 - 9092547
Alignment:
Q  257 aaaatggatgacgtactgtatcccatgtgtatcttgca 294  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9092584 aaaatggatgacgtactgtatcctatgtgtatcctgca 9092547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 28659410 - 28659362
Alignment:
Q  248 agatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||||||||||||||||||||| |||| || || ||||| ||||||    
T  28659410 agatactttaaaatggatgacgtacggtattccctgcgtatcatgcacc 28659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 42174 - 42127
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  42174 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 42127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 5325830 - 5325783
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  5325830 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 5325783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 38492368 - 38492321
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  38492368 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 38492321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 52122978 - 52122931
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  52122978 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 52122931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 3403683 - 3403638
Alignment:
Q  250 atactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 295  Q
    |||||| |||||||||||||||| ||||||| |||||||| |||||    
T  3403683 atacttcaaaatggatgacgtaccgtatcccctgtgtatcctgcac 3403638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 41145621 - 41145666
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 294  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||    
T  41145621 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgca 41145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 2586345 - 2586385
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatc 289  Q
    |||||||||||||||||||||||| ||||||| || |||||    
T  2586345 gatactttaaaatggatgacgtaccgtatcccctgagtatc 2586385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 42472687 - 42472631
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||| ||| ||||||| ||||||||||||||||||||| || || ||||| ||||||    
T  42472687 tgaagtcccgatacttcaaaatggatgacgtactgtattccctgcgtatcctgcacc 42472631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 55901257 - 55901201
Alignment:
Q  240 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||| || ||||||||||||| |||||||||  ||||||| |||||||| ||||||    
T  55901257 tgaaaccccgatactttaaaatagatgacgtatcgtatcccctgtgtatcctgcacc 55901201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 37996920 - 37996873
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  37996920 gatactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 37996873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 47642026 - 47642073
Alignment:
Q  249 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 296  Q
    ||||||| |||||||||||||||| |||||||||| ||||| ||||||    
T  47642026 gatacttcaaaatggatgacgtaccgtatcccatgcgtatcctgcacc 47642073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University