View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_66 (Length: 354)
Name: NF1376_high_66
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 34848173 - 34848016
Alignment:
| Q |
3 |
atgtgtatcttgcacctgatgtcttgataaaatttgaatctaaattaaaaattcacaaatatattagaatatatgtaccttttttcctttcttgtgtacg |
102 |
Q |
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| T |
34848173 |
atgtgtatcctgcatccgatgtcttgataaaatttgaatctaaattaaaaatttacaaatgtattacaatatatgtaccttttttcctttcttgtgtacg |
34848074 |
T |
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| Q |
103 |
aactatgagaccatctgaaagataaccaatagaggctctatcatcaatggttaatctt |
160 |
Q |
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| T |
34848073 |
aactatgagaccatctgaaagataaccaatagaggctctatcatcaatggttaatctt |
34848016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 34847967 - 34847839
Alignment:
| Q |
209 |
tccatgctaaaactctttttcatggacacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactactacttcctcttaatg |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34847967 |
tccatgctaaaactctttttcatggaaacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactaccacttcctcttaatg |
34847868 |
T |
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| Q |
309 |
aattacatgtccttgaattatgacctatg |
337 |
Q |
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| T |
34847867 |
aattacaagtccttgaattatgacctatg |
34847839 |
T |
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