View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_70 (Length: 350)
Name: NF1376_high_70
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 21827748 - 21827531
Alignment:
| Q |
30 |
gattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctcca |
129 |
Q |
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| T |
21827748 |
gattgaaacagttatcaagtttaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttgtagatatggagtcttcatgttgtcca |
21827649 |
T |
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| Q |
130 |
caatccaagatacca---cacacttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatagcag |
226 |
Q |
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| T |
21827648 |
caatccaagttgccatttccaactttatctgctacctctaagggagaaccaaaggtttcactagttaatgacggaatgatgaatatacaagaaatagcgg |
21827549 |
T |
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| Q |
227 |
atg-gagaaaggttgtct |
243 |
Q |
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||| ||||||| |||||| |
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| T |
21827548 |
atgagagaaagcttgtct |
21827531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 39603492 - 39603270
Alignment:
| Q |
30 |
gattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctcca |
129 |
Q |
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| T |
39603492 |
gattgaaacaattatcaagtttaaggtgattgaaacaatcatgatttagatcttacttatttgattttattttgtagatatggagttttcacgttgtcca |
39603393 |
T |
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| Q |
130 |
caatccaagatacca--cacac-ttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatagcag |
226 |
Q |
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| T |
39603392 |
caacccaagttaccatttccacttttatctgctacctctaagggagaaccaaaggtttcactagttaatgacaaaatgatgaatataaaagaaatagcag |
39603293 |
T |
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| Q |
227 |
atg-gagaaaggttgtctctgct |
248 |
Q |
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| T |
39603292 |
atgagagaaaggttgtctctgct |
39603270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 43022325 - 43022162
Alignment:
| Q |
89 |
tttgattttattttttagatatggagtcttcatgttctccacaatccaagatacca----cacacttcatctgctacctctaaggaagaaccaaaggctt |
184 |
Q |
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| T |
43022325 |
tttgattttattttccagatatggagtcttctcgttgcccacagcccaagataccatcttca-acttcatctgctacctccaagggagaaccaaaggttt |
43022227 |
T |
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| Q |
185 |
cactagttaatgaaggaatgacgaatatacaagaaatagcagatg-gagaaaggttgtctctgct |
248 |
Q |
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| T |
43022226 |
cacaagttaatgaaggaatgacaaatatacaggaaatagctgctgagataaaggatgtctctgct |
43022162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 42812035 - 42811989
Alignment:
| Q |
41 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
87 |
Q |
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| T |
42812035 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
42811989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 43022414 - 43022368
Alignment:
| Q |
41 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
87 |
Q |
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| T |
43022414 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
43022368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 42811883 - 42811808
Alignment:
| Q |
148 |
acttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatag |
223 |
Q |
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| T |
42811883 |
acttcatctgcaacctccaagggagaaccaaaggtttcacaagttaatgaaggaatggcaaatatacaggaaatag |
42811808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 35061082 - 35061042
Alignment:
| Q |
44 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
84 |
Q |
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| T |
35061082 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
35061042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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