View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_high_71 (Length: 346)

Name: NF1376_high_71
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_high_71
NF1376_high_71
[»] chr1 (1 HSPs)
chr1 (56-346)||(50336965-50337255)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 56 - 346
Target Start/End: Original strand, 50336965 - 50337255
Alignment:
Q  56 cgttacccaatcagaaatggatcctcaccgtcgaatttgcaacccgaaaccaccgcagagcttgatatgtttctggaacttcttcctttggagatgagga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50336965 cgttacccaatcagaaatggatcctcaccgtcgaatttgcaacccgaaaccaccgcagagcttgatatgtttctggaacttcttcctttggagatgagga 50337064  T
Q  156 tggaattgtatcgtcaccaagagattggtggactcattgaagttgttatggatttaggtagaaagcctcttgctagattcccttctggtgattgggtcat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50337065 tggaattgtatcgtcaccaagagattggtggactcattgaagttgttatggatttaggtagaaagcctcttgctagattcccttctggtgattgggtcat 50337164  T
Q  256 ttctcaacgacccattaaccatgatgatttacgccacgccatttctaaggtactactctacctctattttttggataaacaacttaattaa 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50337165 ttctcaacgacccattaaccatgatgatttacgccacgccatttctaaggtaccactctacctctattttttggataaacaacttaattaa 50337255  T

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