View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_75 (Length: 336)
Name: NF1376_high_75
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 49935320 - 49935609
Alignment:
| Q |
30 |
aaaatcagttggtaatttaatttgctgtgatcatacaaaaagttagatgaaaaaatgtccttgaaaatttgcactctataccaaattaatcatgcgttga |
129 |
Q |
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| T |
49935320 |
aaaatcagttggtaatttaatttgctgtgatcatacaaaaagttagatgaaaaaatgtccttgaaaatttgcactctataccaaattaatcatgcgttga |
49935419 |
T |
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| Q |
130 |
ttctttcttatataggcagtttaccgtggtatttcttacgatgatcaaacgctattaagaattggcatggaactcttacgtgccattcaagatattgcgt |
229 |
Q |
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| T |
49935420 |
ttctttcttatataggcagtttaccatggtatttcttacgatgaccaaacgctattaaaaattggcatggaactc-----tgccatttaagatattgcgt |
49935514 |
T |
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| Q |
230 |
tacagttagagaaggtaaattttttgcatctgctcactttctgttgcttggatatttgaatttcttcaatcctatagccgtgttttttgcattca |
324 |
Q |
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| T |
49935515 |
tacggttagagaaggtaaattttttgcatttgctcactttctgttgcttggatatttgaatttcttcaatcctatagccgtgttttttgcattca |
49935609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 84 - 307
Target Start/End: Original strand, 49930749 - 49930970
Alignment:
| Q |
84 |
atgtccttgaaaatttgcactctataccaaattaatcatgcgttgattctttcttatataggcagtttaccgtggtatttcttacgatgatcaaacgcta |
183 |
Q |
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| T |
49930749 |
atgtccttgaaaatttgcactcta--ccaaattaactatgcattggctctttcttttataggcagtttacaatgttatttcttacgatgatcaaacacga |
49930846 |
T |
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| Q |
184 |
ttaagaattggcatggaactcttacgtgccattcaagatattgcgttacagttagagaaggtaaattttttgcatctgctcactttctgttgcttggata |
283 |
Q |
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| T |
49930847 |
ttaagaactggcatggaactcttaagtgccactcaagatattgagtcacagttggagaaggtaaactttttgcatttgctcactttctgttacttggata |
49930946 |
T |
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| Q |
284 |
tttgaatttcttcaatcctatagc |
307 |
Q |
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| T |
49930947 |
gtttaatttctcctatactatagc |
49930970 |
T |
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