View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_8 (Length: 653)
Name: NF1376_high_8
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_8 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 5 - 653
Target Start/End: Original strand, 19642478 - 19643126
Alignment:
| Q |
5 |
cagcaccacagaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacaggtcatcgggtcccgaacttgttggaca |
104 |
Q |
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| T |
19642478 |
cagcaacacaaaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacatgtcatcgggtcccgaacttgttggaca |
19642577 |
T |
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| Q |
105 |
aacaaatcgccataaattatccacaaaagataaatatttttcaggtttctcagcctcagatccaactctttccacaccccaaaagaatgcatgaaccaaa |
204 |
Q |
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| T |
19642578 |
aacaaatcgccataaattatccacaaaagataaatattgttcaggtttctcagcctcagatccaactctttccacaccccaaaagaatgcatgaaccaaa |
19642677 |
T |
|
| Q |
205 |
acaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaaaa |
304 |
Q |
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| T |
19642678 |
acaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaaaa |
19642777 |
T |
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| Q |
305 |
cttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgagaagccacccatttgagggaagtccatgaatcttcgtatgc |
404 |
Q |
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| T |
19642778 |
cttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgagaagccacccatttgagggaagtccatgaatcttcgtatgc |
19642877 |
T |
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| Q |
405 |
tataggaagaggatgttctggggctcttctgtaatcaactgaaacagccattacattagcttgagaaacaacggtattgaggtaattgtggtatgttggg |
504 |
Q |
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| T |
19642878 |
tataggaagaggatgttctggggctcttctgtaatcaactgaaacagccattacattagcttgagaaacaatggtattgaggtaattgtggtatgttggt |
19642977 |
T |
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| Q |
505 |
gagaaaggtgtttctacgcagaaaccaccaccgtggaagtaaacaaggagagggagtttttggtttggaaattcatcgttgttgggtatgggaatgaaga |
604 |
Q |
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| T |
19642978 |
gagaaaggtgtttctacgcagaaaccaccaccgtggaagtaaacaaggagagggagtttttggtttggaaattcatcgttgttgggtatgggaatgaaga |
19643077 |
T |
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| Q |
605 |
ttctggctgatatgttttggtcttttgagatgaaaacgtctttggattc |
653 |
Q |
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| T |
19643078 |
ttctggctgatatgttttgggcttttgagatgaaaacgtctttggattc |
19643126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 5 - 653
Target Start/End: Original strand, 33918001 - 33918649
Alignment:
| Q |
5 |
cagcaccacagaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacaggtcatcgggtcccgaacttgttggaca |
104 |
Q |
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| T |
33918001 |
cagcaacacaaaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccgaacttgttggaca |
33918100 |
T |
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| Q |
105 |
aacaaatcgccataaattatccacaaaagataaatatttttcaggtttctcag---cctcagatccaactctttccacaccccaaaagaatgcatgaacc |
201 |
Q |
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| T |
33918101 |
aacaaacctccataaattatcagccaaagataagtgtt---cagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaacc |
33918197 |
T |
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| Q |
202 |
aaaacaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaaga |
301 |
Q |
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| T |
33918198 |
aaaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatttgcaatgtttgcaccagcactgtctcctgcaaaga |
33918297 |
T |
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| Q |
302 |
aaacttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgagaagccacccatttgagggaagtccatgaatcttcgta |
401 |
Q |
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| | ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33918298 |
acatttttccaaaatctgcataacggttgatccattcatcagaaccatttccatgcaaatgagaaacgacccatttgagggaagtccatgaatcttcgta |
33918397 |
T |
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| Q |
402 |
tgctataggaagaggatgttctggggctcttctgtaatcaactgaaacagccattacattagcttgagaaacaacggtattgaggtaattgtggtatgtt |
501 |
Q |
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| T |
33918398 |
tgctataggaagagggtgttctggggctcttctgtaatcaactgaaacagcaataacattagcttttgaaacgatggtgttgaggaaattgtggtatggt |
33918497 |
T |
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| Q |
502 |
ggggagaaaggtgtttctacgcagaaaccaccaccgtggaagtaaacaaggagagggagtttttggtttggaaattcatcgttgttgggtatgggaatga |
601 |
Q |
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| T |
33918498 |
ggtgagaaaggtgtttctacgcagaaaccaccaccatggaagtaaacaaggagagggagtttttggtttggaaattgatcgttgttgagtttgggaatga |
33918597 |
T |
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| Q |
602 |
agattctggctgatatgttttggtcttttgagatgaaaacgtctttggattc |
653 |
Q |
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| T |
33918598 |
agattctggctgatatgttttggtcttttgagatgagaatgtctttggattc |
33918649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 262 - 572
Target Start/End: Complemental strand, 33902072 - 33901762
Alignment:
| Q |
262 |
tggtgtgcaatgtttgcaccagcactgtctcctgcaaagaaaacttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaat |
361 |
Q |
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| T |
33902072 |
tggtgtgcaatattagccccagcactatcacctcctaagaaaactttctcaaaatctgcatattgattcaaccattcatcagaaccatttccaccaacat |
33901973 |
T |
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| Q |
362 |
gagaagccacccatttgagggaagtccatgaatcttcgtatgctataggaagaggatgttctggggctcttctgtaatcaactgaaacagccattacatt |
461 |
Q |
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| T |
33901972 |
gtgaagcaacccatttgagtgcaagccatgaatcttcatgacccgtgggaacaggatgttccggtgctcttctgtaatgaacagagacaccaataacgtt |
33901873 |
T |
|
| Q |
462 |
agcttgagaaacaacggtattgaggtaattgtggtatgttggggagaaaggtgtttctacgcagaaaccaccaccgtggaagtaaacaaggagagggagt |
561 |
Q |
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| T |
33901872 |
agcaagtgaagtaacagagttgaggtagttatggtagtttggtgaaaaaggagtttcaatgcagaaagcaccaccatggatgtaaacaagaagagggagt |
33901773 |
T |
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| Q |
562 |
ttttggtttgg |
572 |
Q |
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| T |
33901772 |
ttttgggttgg |
33901762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 33897022 - 33897089
Alignment:
| Q |
505 |
gagaaaggtgtttctacgcagaaaccaccaccgtggaagtaaacaaggagagggagtttttggtttgg |
572 |
Q |
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|||||||||||||| | ||||||||||||||| |||||||| |||| || ||||||||||||| |||| |
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| T |
33897022 |
gagaaaggtgtttcaatgcagaaaccaccaccatggaagtagacaaagacagggagtttttggattgg |
33897089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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