View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_high_81 (Length: 328)

Name: NF1376_high_81
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_high_81
NF1376_high_81
[»] chr7 (1 HSPs)
chr7 (8-301)||(33954015-33954309)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 33954015 - 33954309
Alignment:
Q  8 caccacagatggatccttgcatggttttccaatcaaaatctcttttccatcaatcttaacctttgctccacatccaatgtgtaaattgtagttatacttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33954015 caccacagatggatccttgcatggttttccaatcaaaatctcttttccatcaatcttaacctttgctccacatccaatgtgtaaattatagttatacttc 33954114  T
Q  108 ccaccatgtccacaacaagccctcaaaggttccttaaaacctgttttaatcaagaaaaaccat-nnnnnnncacactttcatggaccaatgatgatattc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||| ||||||||    
T  33954115 ccaccatgtccacaacaagccctcaaaggttccttaaaacctgttttaatcaagcaaaaccataaaaaaaacacactttcatggaccaatgctgatattc 33954214  T
Q  207 atggacaaaaatatatttaatcttagtatttaccatgtctgtatgcttgactaatgagagagtacttggctgagtaaacgtcgacataggttatg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33954215 atggacaaaaatatatttaatcttagtatttaccatgtctgtatgcttgactaatgagagagtacttggctgagtaaacgtcgacataggttatg 33954309  T

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