View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_82 (Length: 325)
Name: NF1376_high_82
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_82 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 10396672 - 10396466
Alignment:
| Q |
29 |
ataaagaatgaaattgtttcatctaagcaagagaaagatcagagc-atgaagcacaacaaaggtgagagggtggaattaccattgcaggaagtgcatggc |
127 |
Q |
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| T |
10396672 |
ataaagaatgaaattgtttcatctaagcaagagaaagataagagcgatgaagcacaacaaaggtgagagggtggaagtaccatcgcaggaagtgcatggt |
10396573 |
T |
|
| Q |
128 |
tagctaagttaattacgtgaacagttat-aaaagaggtctcaataacgattggaaatataaaaggatgatatgaagatgaaaacccaacgtagaaatcga |
226 |
Q |
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| T |
10396572 |
tagctaagttaattacttgaacagttataaaaagaggtctcaatatcgattgaaaatataaaaggaggatatgaagatgaaaatacaacgtagaaataaa |
10396473 |
T |
|
| Q |
227 |
gagaaac |
233 |
Q |
| |
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||||||| |
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| T |
10396472 |
gagaaac |
10396466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 10396438 - 10396383
Alignment:
| Q |
253 |
taccacattcgtgtgtgtagcacgaaaatatttgtcgtgtcttttatcatttttct |
308 |
Q |
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| T |
10396438 |
taccacattcgtgtctttagcacgaaaatatttgttgtgtcatttaccatttttct |
10396383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 153 - 312
Target Start/End: Complemental strand, 48069226 - 48069067
Alignment:
| Q |
153 |
tataaaagaggtctcaataacgattggaaatataaaaggatgatatgaagatgaaaacccaacgtagaaatcgagagaaacccttgtatatggaggttgt |
252 |
Q |
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| T |
48069226 |
tataaaagaggtctcaataacgattgaaaatataaaaggatgatatgaagatgaaaacccaatatagaaatagagagaaacccttgtatatggaggttgt |
48069127 |
T |
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| Q |
253 |
taccacattcgtgtgtgtagcacgaaaatatttgtcgtgtcttttatcatttttctattc |
312 |
Q |
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| T |
48069126 |
taccacattcgtgtgtgtagcacgaaaatatttatcgtgtcttttagcatttttctattc |
48069067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 8913794 - 8913661
Alignment:
| Q |
29 |
ataaagaatgaaattgtttcatctaagcaagagaaaga----tcagagc-atgaagcacaacaaaggtgagagggtggaat---taccattgcaggaagt |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
8913794 |
ataaagaatgaaattgtttcatctaagcaagagagagagagattagagtgatgaagcacaacaaaggtgagagggtgaaagatgtaccattgcaggaagt |
8913695 |
T |
|
| Q |
121 |
gcatggctagctaagttaattacgtgaacagtta |
154 |
Q |
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| T |
8913694 |
gcatggctagctaacttatttacttgaactgtta |
8913661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 8913512 - 8913440
Alignment:
| Q |
161 |
aggtctcaataacgattggaaatataaaaggatgatatgaagatgaaaacccaacgtagaaatcgagagaaac |
233 |
Q |
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||||||||||| ||| || ||||||||||||| ||||||||||| ||||| |||| | ||||| ||||||||| |
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| T |
8913512 |
aggtctcaatatcgactgaaaatataaaaggaggatatgaagataaaaacacaacattgaaatagagagaaac |
8913440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 38282850 - 38282780
Alignment:
| Q |
29 |
ataaagaatgaaattgtttcatctaagcaagagaaagatcagagc-atgaagcacaacaaaggtgagagggtg |
100 |
Q |
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||||| || ||||| |||||||||||||||||| |||| ||||| ||||||||||| | ||||||||||||| |
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| T |
38282850 |
ataaaaaaagaaatcgtttcatctaagcaagag--agattagagcaatgaagcacaaaacaggtgagagggtg |
38282780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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