View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_84 (Length: 321)
Name: NF1376_high_84
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_84 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 10476999 - 10477171
Alignment:
| Q |
66 |
caaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtcgt |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10476999 |
caaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtcgt |
10477098 |
T |
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| Q |
166 |
tacaaaatttcgtcattcttaaaaaagtgacatgtttttgtctttatcaaatttttaagcatgcagttttatt |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
10477099 |
tacaaaatttcgtcattcataaaaaagtgacatgtttttgtcttgaccaaatttttaagcatgcagttttatt |
10477171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 10474624 - 10474732
Alignment:
| Q |
66 |
caaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtcgt |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10474624 |
caaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgtttttgtcgt |
10474723 |
T |
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| Q |
166 |
tacaaaatt |
174 |
Q |
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||||||||| |
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| T |
10474724 |
tacaaaatt |
10474732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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