View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_high_86 (Length: 318)

Name: NF1376_high_86
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_high_86
NF1376_high_86
[»] chr2 (23 HSPs)
chr2 (9-289)||(9321708-9321988)
chr2 (84-289)||(10372599-10372804)
chr2 (77-264)||(9292670-9292857)
chr2 (10-187)||(9329418-9329599)
chr2 (30-276)||(9060271-9060517)
chr2 (30-235)||(8572675-8572879)
chr2 (32-235)||(9316793-9316999)
chr2 (77-250)||(10353901-10354074)
chr2 (77-194)||(10336623-10336740)
chr2 (77-189)||(10348620-10348732)
chr2 (77-186)||(12018134-12018243)
chr2 (77-190)||(7114865-7114978)
chr2 (77-194)||(9275335-9275452)
chr2 (77-194)||(9283394-9283511)
chr2 (77-194)||(12005385-12005502)
chr2 (110-235)||(14551091-14551215)
chr2 (88-187)||(9357935-9358034)
chr2 (77-186)||(12011813-12011922)
chr2 (77-186)||(7612716-7612825)
chr2 (107-186)||(9365415-9365494)
chr2 (80-139)||(8578748-8578807)
chr2 (77-182)||(11986745-11986850)
chr2 (77-177)||(17565334-17565434)
[»] chr3 (2 HSPs)
chr3 (77-250)||(37463278-37463451)
chr3 (77-151)||(39428733-39428807)
[»] scaffold0667 (1 HSPs)
scaffold0667 (77-204)||(5261-5388)
[»] chr4 (2 HSPs)
chr4 (77-250)||(26575635-26575808)
chr4 (110-194)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (77-208)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (92-219)||(29452586-29452713)
chr1 (92-235)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (77-185)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 9321988 - 9321708
Alignment:
Q  9 accacagaaccctagaacgaaccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcact 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321988 accacacaaccctagaacgaaccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcact 9321889  T
Q  109 tctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321888 tctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatc 9321789  T
Q  209 attcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaac 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321788 attcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaac 9321708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 10372804 - 10372599
Alignment:
Q  84 tctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaa 183  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||| ||| | |||||||||||||| ||| |    
T  10372804 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctcca 10372705  T
Q  184 aaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgat---gatcatgatgatttctctaaatccatgatgatt 280  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||||||||   || ||||    
T  10372704 aaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatc---gaggatt 10372608  T
Q  281 ccactcaac 289  Q
    |||||||||    
T  10372607 ccactcaac 10372599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 9292857 - 9292670
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| |||||||| |||| |||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||  |||||  |||||||    
T  9292857 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 9292758  T
Q  177 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctc 264  Q
    | ||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9292757 acctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgatgatgatttctc 9292670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 9329599 - 9329418
Alignment:
Q  10 ccacagaaccctagaacgaaccttccttcc----aatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatc 105  Q
    ||||| ||||||||||||||||||||||||    ||||||| ||||||||| || ||||||||||||   ||||||||||||||||||||||||||||||    
T  9329599 ccacacaaccctagaacgaaccttccttccttccaatggcgggtgatgttcttctgccggaattgttaacggaaatcctctcccgcttaccggtaaaatc 9329500  T
Q  106 acttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 187  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||| |||||||||    
T  9329499 acttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 276
Target Start/End: Original strand, 9060271 - 9060517
Alignment:
Q  30 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 129  Q
    |||||||||||||||||  |||||||| |||||||||| |  | |  |||||| ||||||||||||||||  |||||||||||| |||||||||||||||    
T  9060271 ccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttc 9060370  T
Q  130 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aattccctcagtcgatccttaatcattcaacacaaattcgat 226  Q
     ||||||||||||||| |||||||||| ||| ||||||  |||||| | ||||||   ||| |||||| |||||   ||||| ||| |||||||| ||||    
T  9060371 aaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgat 9060470  T
Q  227 ctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 276  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| |||||    
T  9060471 ctctaccaactccaagtcgatg---atgatgatttctctaaatcaatgat 9060517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 8572675 - 8572879
Alignment:
Q  30 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 129  Q
    ||||||||||||||||| ||||||||| |||| ||||| |  |    |||||| |||||||| |||| ||||| |||||||||| |||||||||||||||    
T  8572675 ccttccttccaatggcgggtgatgttcttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttc 8572773  T
Q  130 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctc 229  Q
     |||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||| ||||||||||||| || ||| | |||| ||    
T  8572774 aaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatc 8572873  T
Q  230 taccaa 235  Q
    ||||||    
T  8572874 taccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 9316999 - 9316793
Alignment:
Q  32 ttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttcta 131  Q
    |||||||||||||||  ||| | || |||||||||| |  | |  |||||| |||||| |||||| |||||||||||||||| ||||||||||||||| |    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  132 aatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aattccctcagtcgatccttaatcattcaacacaaattcgatct 228  Q
    |||||||||||||  |||| ||||| ||| |||||||||||||||| ||||||   |||||||||| ||||||||||||| ||||  |||||| ||| ||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  229 ctaccaa 235  Q
    |||||||    
T  9316799 ctaccaa 9316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 10354074 - 10353901
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||||| |||||||||||||||| ||||||||||  ||||||||||||||| |||||| |||||||| ||||||||||  || | |||||||||||||    
T  10354074 gaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttc 10353975  T
Q  177 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 250  Q
    | |||| |||||||| || || |||||||||  ||| |  |||||||||| |||||||| |  |||||||||||    
T  10353974 acctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatctaccaaattaaaatcgatgat 10353901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 10336740 - 10336623
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  10336740 gaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 10336641  T
Q  177 atctcaaaaattccctca 194  Q
    | ||  ||||||||||||    
T  10336640 accttcaaaattccctca 10336623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 10348732 - 10348620
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  10348732 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttc 10348633  T
Q  177 atctcaaaaattc 189  Q
    | || ||||||||    
T  10348632 acctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 12018134 - 12018243
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  12018134 gaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12018233  T
Q  177 atctcaaaaa 186  Q
    | ||||||||    
T  12018234 aactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 7114865 - 7114978
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| |||| ||| |||| |||  ||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  7114865 gaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttc 7114964  T
Q  177 atctcaaaaattcc 190  Q
    |||| |||||||||    
T  7114965 atcttaaaaattcc 7114978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 9275452 - 9275335
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||| ||||| ||| |||||||||||  |||||||||||  || ||||||||||||||  | || ||||| ||| |||||||||||||||    
T  9275452 gaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttc 9275353  T
Q  177 atctcaaaaattccctca 194  Q
    ||||||||||||||||||    
T  9275352 atctcaaaaattccctca 9275335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 9283394 - 9283511
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  |||| |||| ||||| ||| | |||||||||||||    
T  9283394 gaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttc 9283493  T
Q  177 atctcaaaaattccctca 194  Q
    | ||||||| ||||||||    
T  9283494 acctcaaaagttccctca 9283511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 12005385 - 12005502
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| |||||||||||||   | |||||||||||| |||||| ||||||||  |||| |||||||||||||||||||| ||| |||||| ||||||||    
T  12005385 gaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttc 12005484  T
Q  177 atctcaaaaattccctca 194  Q
    |||| |||||||| ||||    
T  12005485 atctaaaaaattctctca 12005502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 14551215 - 14551091
Alignment:
Q  110 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatca 209  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||| ||||| || ||||||||||||| | | |||||||||     
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatcc 14551117  T
Q  210 ttcaacacaaattcgatctctaccaa 235  Q
    ||| |||||| | | |||||||||||    
T  14551116 ttcgacacaagtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 9358034 - 9357935
Alignment:
Q  88 ccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 187  Q
    ||||||||| ||||||||||||||||  ||  |||||||||| ||||||||||||||| |||||||||| ||| ||||||| |||||||| |||||||||    
T  9358034 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 12011813 - 12011922
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||||||||    | |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  12011813 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12011912  T
Q  177 atctcaaaaa 186  Q
    | ||||||||    
T  12011913 acctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 7612825 - 7612716
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    ||||||||||| |||||||||||| || | || |||| ||||||||||| ||||||||| ||||||||| |||| ||||| ||| ||||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  177 atctcaaaaa 186  Q
    | ||||||||    
T  7612725 acctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  107 cttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 186  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||| |||  ||||| |||||| |||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 8578748 - 8578807
Alignment:
Q  80 atcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcactt 139  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||    
T  8578748 atcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcactt 8578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 11986745 - 11986850
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||||||||    | |||||||||||| |||||| ||||||||  |||| |||||||||||||| ||||| ||| |||||| ||| ||||    
T  11986745 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttc 11986844  T
Q  177 atctca 182  Q
    | ||||    
T  11986845 acctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 17565334 - 17565434
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    ||||||||||| |||||||| ||| |||| || |||| | |||||||||| || |||||||||||||   |||| ||||| ||  |||||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  177 a 177  Q
    |    
T  17565434 a 17565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 37463451 - 37463278
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||  |||||||||| ||| |||||||||||||||    
T  37463451 gaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttc 37463352  T
Q  177 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 250  Q
    ||||||||||| |||||| || |||| ||||||||| | |||| | |||| |||||||||||||||||||||||    
T  37463351 atctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgat 37463278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 39428807 - 39428733
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatc 151  Q
    |||||||||||||||||||||||  |||| || |||||||||||||||||||| |||| | |||||||| |||||    
T  39428807 gaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc 39428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 5388 - 5261
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  5388 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttc 5289  T
Q  177 atctcaaaaattccctcagtcgatcctt 204  Q
    | | |||||||||||||| | |||||||    
T  5288 accgcaaaaattccctcaatagatcctt 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 26575808 - 26575635
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||  || | |||||||||||||    
T  26575808 gaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttc 26575709  T
Q  177 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 250  Q
    | |||| |||||||| || ||||||||||||| ||| |  |||||||||| ||||||||||  ||||| |||||    
T  26575708 acctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatctaccaacttgaaatcaatgat 26575635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 562066 - 561982
Alignment:
Q  110 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctca 194  Q
    |||| |||||||| || ||| ||||  |||||||||||||||||||| ||| ||||||  |||||||| |||||||| |||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctca 561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 41965942 - 41966073
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||| ||||||  ||||||||||||||| |||||| |||||||||||| || |||||||||  |||| |||||||||| ||| |||||||||||||||    
T  41965942 gaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttc 41966041  T
Q  177 atctcaaaaattccctcagtcgatccttaatc 208  Q
    | |||| ||| ||||||| |||||||||||||    
T  41966042 acctcagaaaatccctcaatcgatccttaatc 41966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 29452586 - 29452713
Alignment:
Q  92 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 191  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| ||| |||||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 29452685  T
Q  192 tcagtcgatccttaatcattcaacacaa 219  Q
    ||| ||| ||||||||| ||| ||||||    
T  29452686 tcaatcgttccttaatccttcgacacaa 29452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 235
Target Start/End: Original strand, 29467060 - 29467203
Alignment:
Q  92 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 191  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| |||  ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccc 29467159  T
Q  192 tcagtcgatccttaatcattcaacacaaattcgatctctaccaa 235  Q
    ||| ||| | ||||||| ||| |||||| | |||| ||||||||    
T  29467160 tcaatcgtttcttaatccttcgacacaactccgatttctaccaa 29467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 36225679 - 36225571
Alignment:
Q  77 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 176  Q
    |||||||||||||||||||  ||  |||| || |||| ||||||||||||||| ||||||||||||||  |||||||||||||| ||||||  || ||||    
T  36225679 gaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttc 36225580  T
Q  177 atctcaaaa 185  Q
    | |||||||    
T  36225579 acctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University