View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_1 (Length: 1064)

Name: NF1376_low_1
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_1
NF1376_low_1
[»] chr4 (11 HSPs)
chr4 (432-964)||(53121443-53121978)
chr4 (28-351)||(53121973-53122296)
chr4 (391-483)||(49863030-49863122)
chr4 (392-471)||(55957970-55958049)
chr4 (310-355)||(34968342-34968386)
chr4 (322-354)||(18004476-18004508)
chr4 (322-368)||(2228399-2228446)
chr4 (302-368)||(7967628-7967694)
chr4 (307-354)||(32923248-32923294)
chr4 (307-354)||(50380854-50380900)
chr4 (309-354)||(23673100-23673144)
[»] chr6 (5 HSPs)
chr6 (745-863)||(33805794-33805912)
chr6 (391-483)||(15572537-15572629)
chr6 (307-355)||(24438299-24438346)
chr6 (307-354)||(9311948-9311994)
chr6 (391-467)||(3005283-3005357)
[»] chr7 (7 HSPs)
chr7 (784-866)||(30952309-30952391)
chr7 (677-730)||(30952420-30952473)
chr7 (403-480)||(5780527-5780604)
chr7 (322-382)||(38553829-38553890)
chr7 (325-354)||(23374648-23374677)
chr7 (321-369)||(31885947-31885996)
chr7 (309-354)||(34000261-34000305)
[»] chr2 (8 HSPs)
chr2 (391-483)||(19315314-19315406)
chr2 (307-382)||(17736790-17736865)
chr2 (322-354)||(20644015-20644047)
chr2 (322-368)||(20517033-20517080)
chr2 (309-351)||(35727436-35727477)
chr2 (310-370)||(18324895-18324955)
chr2 (310-351)||(23250341-23250381)
chr2 (322-370)||(25274830-25274879)
[»] chr3 (8 HSPs)
chr3 (393-483)||(29400980-29401070)
chr3 (394-483)||(30058252-30058341)
chr3 (307-354)||(53633635-53633681)
chr3 (307-368)||(1757672-1757733)
chr3 (309-382)||(21245792-21245865)
chr3 (309-351)||(22486682-22486723)
chr3 (394-467)||(19340436-19340508)
chr3 (322-355)||(35208854-35208887)
[»] chr1 (10 HSPs)
chr1 (304-354)||(3573342-3573391)
chr1 (311-350)||(29059427-29059465)
chr1 (307-354)||(41182624-41182670)
chr1 (304-354)||(34083331-34083380)
chr1 (309-351)||(47719128-47719169)
chr1 (321-354)||(9413808-9413841)
chr1 (321-354)||(25271781-25271814)
chr1 (302-370)||(27853347-27853415)
chr1 (321-354)||(32826723-32826756)
chr1 (310-351)||(51067915-51067955)
[»] chr5 (3 HSPs)
chr5 (391-467)||(17816584-17816660)
chr5 (307-351)||(5107266-5107309)
chr5 (307-351)||(36623195-36623238)
[»] scaffold0027 (1 HSPs)
scaffold0027 (309-354)||(61588-61632)
[»] chr8 (4 HSPs)
chr8 (391-467)||(3887780-3887856)
chr8 (307-348)||(17806486-17806526)
chr8 (309-354)||(36919310-36919354)
chr8 (309-354)||(41625193-41625237)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 432 - 964
Target Start/End: Complemental strand, 53121978 - 53121443
Alignment:
Q  432 tatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgtacccacattgccacatgttgtggggg-tttaaggg-tgtataccaccta 529  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  53121978 tatatgccctatgtaggagggtattttggtaatgtgtaactaagaatatgtacccacattgccacatgttgtggggggtttaaggggtgtataccaccta 53121879  T
Q  530 tatgtgtctacgtgtataagcactcatgtgcaaaatatacatacgtatgacatgcagttacgaggacaacatataatagtgtgtgaaactctaaatgagt 629  Q
    | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53121878 tctgtgtctacgtgtataagcactcccgtgcaaaatatacatacgtatgacatgcagttacgaggacaacatataatagtgtgtgaaactcaaaatgagt 53121779  T
Q  630 ttcgtaaaaagtgactactatttgagatgctcttaggaagcaaaacaagagtaattatacccatacatcctaacgtgccatacaccatcctaccacttca 729  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  53121778 tccgtaaaaagtgactactatttgagatgctcttaggaagcaaaacaagagtaattatacccatacatcctaacgtcgcatacaccatcctaccacttca 53121679  T
Q  730 atattaca-nnnnnnnattaattattttggggtaattttgtccatttcnnnnnnncaaggggataaaattgtccaacacagtcaacaactgtcatcctct 828  Q
    ||||||||        ||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||| |||||||||    
T  53121678 atattacattttttttattaattattttggggtaattttgtccatttcaaaaaaacaaggggacaaaattgtccaacacagtcagcaactatcatcctct 53121579  T
Q  829 tttctctttcttctcctcaccgtccaacacaccaaccgccgccgtcgcgccaccacaaccgtgttaagttgtccaactgttacaacctctcttcttcctc 928  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53121578 tttctctttcttctcctcaccgtccaacacaccaaccgccgccgtcgcgccaccacaaccgtgttaagttgtccaactgttacaacctctcttcttcctc 53121479  T
Q  929 tttctcagacccacttttgttttctctctccatgga 964  Q
    ||||||||||||||||||||||||||||||||||||    
T  53121478 tttctcagacccacttttgttttctctctccatgga 53121443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 351
Target Start/End: Complemental strand, 53122296 - 53121973
Alignment:
Q  28 atctccaataatatcaacgagagttttacaacaaggtgaacctgtatcnnnnnnnn-attggagaaagacctacattgagaatttgagtttcataaaatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  53122296 atctccaataatatcaacgagagttttacaacaaggtgaacctgtatctttttttttattggagaaagacctacattgagaatttgagtttcataaaatt 53122197  T
Q  127 ttatttgatgagaaaccttgattaagctacgataaaaattgaataaaacatttattttctttcttcaatcacaccaacgaatgcataaaaaagggaacaa 226  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53122196 ttatttgatgagaaaccttgattaggctacgataaaaattgaataaaacatttattttctttcttcaatcacaccaacgaatacataaaaaagggaacaa 53122097  T
Q  227 catttcatatcacaataatgtggattgtttaataatttgcataannnnnnnaccattagagcaaagggaaaatataggtactcgtgagcttaacttcagt 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53122096 catttcatatcacaataatgtggattgtttaataatttgcataa-ttttttaccattagagcaaagggaaaatataggtactcgtgagcttagcttcagt 53121998  T
Q  327 tggtaagaataatgcataatatatg 351  Q
    || |||| | |||||||||||||||    
T  53121997 tgataaggacaatgcataatatatg 53121973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 391 - 483
Target Start/End: Original strand, 49863030 - 49863122
Alignment:
Q  391 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 483  Q
    |||||||||||||||||||||| |||||||||||| |||| || | ||||||| |  ||||||| |||||||||||||||| || ||||||||    
T  49863030 gggaaaatatagatagacactcttttttcataccattcttgtacacaccctatatgagagggtattttggtaatgtgtaacaaaaaatatgta 49863122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 392 - 471
Target Start/End: Complemental strand, 55958049 - 55957970
Alignment:
Q  392 ggaaaatatagatagacactcctttttca-taccactcttctatataccctatgtaggagggtaatttggtaatgtgtaac 471  Q
    |||||||||||||||||| |||||||||  |||||||||| || | |||| |||| |||||||| ||||||||||||||||    
T  55958049 ggaaaatatagatagaca-tcctttttccgtaccactcttgtacacacccaatgtgggagggtattttggtaatgtgtaac 55957970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 34968342 - 34968386
Alignment:
Q  310 gtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 355  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  34968342 gtgagcttaact-cagttggtaaaaataatgcataatatatgtaaa 34968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 18004476 - 18004508
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||||||||||||||||||||||||||||||    
T  18004476 tcagttggtaagaataatgcataatatatgtaa 18004508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 2228446 - 2228399
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 368  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||    
T  2228446 tcagttagtaagaataatgcataatatatgtaaggtctgggattcgaa 2228399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 7967694 - 7967628
Alignment:
Q  302 aggtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa-tctgggattcgaa 368  Q
    |||| |||||||||||||||| |||| ||||  ||||||||||||||||| ||| |||||||||||||    
T  7967694 aggtcctcgtgagcttaactt-agttcgtaaagataatgcataatatatgcaaagtctgggattcgaa 7967628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 32923294 - 32923248
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  32923294 ctcgtgagcttaact-cagttggtatgaacaatgcataatatatgtaa 32923248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 50380900 - 50380854
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  50380900 ctcgtgagcttaa-ttcagttggtatgaacaatgcataatatatgtaa 50380854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 23673100 - 23673144
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||    
T  23673100 cgtgagtttaact-cagttggtgagaataatgcataatatatgtaa 23673144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 9e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 745 - 863
Target Start/End: Original strand, 33805794 - 33805912
Alignment:
Q  745 attaattattttggggtaattttgtccatttcnnnnnnncaaggggataaaattgtccaacacagtcaacaactgtcatcctcttttctctttcttctcc 844  Q
    ||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  33805794 attaattattttggggtaattttgtccatttcaaaaaaacaaggggacaaaattgtccaacacagtcaacaattatcatcctcttttctctttcttctcc 33805893  T
Q  845 tcaccgtccaacacaccaa 863  Q
    |||  ||||||||||||||    
T  33805894 tcagagtccaacacaccaa 33805912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 391 - 483
Target Start/End: Complemental strand, 15572629 - 15572537
Alignment:
Q  391 gggaaaatatagatagacactcctttttc-ataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 483  Q
    ||||||||||||||||||| ||||||||| ||||||||||| || | || |||||| ||||| || |||||||||||||||  ||| |||||||    
T  15572629 gggaaaatatagatagaca-tcctttttccataccactcttgtacacacactatgtgggaggatattttggtaatgtgtaataaaggatatgta 15572537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 24438346 - 24438299
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 355  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  24438346 ctcgtgaacttaact-cagttggtaagaataatgcataatatatgtaaa 24438299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 9311994 - 9311948
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  9311994 ctcgtgagcttaact-cagttggtatgaataatacataatatatgtaa 9311948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 3005357 - 3005283
Alignment:
Q  391 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 467  Q
    ||||||||||| |||||||| | |||||||||| ||| || || ||||||  ||| |||||||| ||||||||||||    
T  3005357 gggaaaatataaatagacacccttttttcatactacttttgtacataccc--tgtgggagggtattttggtaatgtg 3005283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 5e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 784 - 866
Target Start/End: Complemental strand, 30952391 - 30952309
Alignment:
Q  784 caaggggataaaattgtccaacacagtcaacaactgtcatcctcttttctctttcttctcctcaccgtccaacacaccaaccg 866  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30952391 caaggggacaaaattgtccaacacagtcaacaactgtcatcctcttttctctttcttctcctcaccatccaacacaccaaccg 30952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 30952473 - 30952420
Alignment:
Q  677 agagtaattatacccatacatcctaacgtgccatacaccatcctaccacttcaa 730  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  30952473 agagtaattatacccatacatcctaacgtggcatgcaccatcctaccacttcaa 30952420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 5780604 - 5780527
Alignment:
Q  403 atagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatat 480  Q
    |||||||||| ||||||||||||||||| |||| ||||||| | |||||||| || ||||||||||||| ||| ||||    
T  5780604 atagacactcttttttcataccactcttgtatacaccctatatgggagggtatttcggtaatgtgtaacaaaggatat 5780527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 38553829 - 38553890
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 382  Q
    |||||||||||||| ||||||||||||||||||  | |||| |||||||||||| |||||||    
T  38553829 tcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaacctcggacatcaca 38553890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 23374677 - 23374648
Alignment:
Q  325 gttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||||||||||||||||||    
T  23374677 gttggtaagaataatgcataatatatgtaa 23374648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 31885996 - 31885947
Alignment:
Q  321 ttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaac 369  Q
    ||||||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  31885996 ttcagttggtatgaacaatgcataatatatgtaagatctggaattcgaac 31885947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 34000261 - 34000305
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||    
T  34000261 cgtgagcttaact-cagttgataaggataatgcataatatatgtaa 34000305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 7e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 391 - 483
Target Start/End: Original strand, 19315314 - 19315406
Alignment:
Q  391 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 483  Q
    |||||||||||||||||||| | |||| |||||||||||| |||| ||| |||||  ||||||| |||||||||||||||| |||||||||||    
T  19315314 gggaaaatatagatagacaccctttttccataccactcttgtatacaccttatgtgagagggtattttggtaatgtgtaacaaagaatatgta 19315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 17736790 - 17736865
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 382  Q
    |||||||||||| || ||||||||| ||| ||||||||| |||||||| |||  |||||||||||||||||| ||||    
T  17736790 ctcgtgagcttagct-cagttggtatgaacaatgcataaaatatgtaagatcatggattcgaacctcggccaccaca 17736865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 20644015 - 20644047
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||||||||||||||||||||||||||||||    
T  20644015 tcagttggtaagaataatgcataatatatgtaa 20644047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 20517033 - 20517080
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 368  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||    
T  20517033 tcagttggtaagaacaatgcataatatatgtaagttctgggattcgaa 20517080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 35727436 - 35727477
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  35727436 cgtgagcttaact-cagttggtaagaacaatgcataatatatg 35727477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 18324955 - 18324895
Alignment:
Q  310 gtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 370  Q
    |||||||||||| ||||||||||| | ||||||||||||||| || |||| |||||||||||    
T  18324955 gtgagcttaact-cagttggtaaggacaatgcataatatatgcaagatctaggattcgaacc 18324895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 23250381 - 23250341
Alignment:
Q  310 gtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  23250381 gtgagcttaact-cagttggtaagaacaatgcataatatatg 23250341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 25274879 - 25274830
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 370  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||||||||    
T  25274879 tcagttggtaagaacaatgcataatatatgtaaggtctggggttcgaacc 25274830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 393 - 483
Target Start/End: Original strand, 29400980 - 29401070
Alignment:
Q  393 gaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 483  Q
    ||||||||||||||||||   ||||||||||||||||| || | ||| |||||  ||||||| |||||||||||||||| ||| |||||||    
T  29400980 gaaaatatagatagacaccattttttcataccactcttgtacacaccgtatgtgtgagggtattttggtaatgtgtaacaaaggatatgta 29401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 30058252 - 30058341
Alignment:
Q  394 aaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 483  Q
    |||||||||||| |||  | |||||||||||| |||| || | ||||||||| |||||||| |||||||||||||||| ||| |||||||    
T  30058252 aaaatatagatatacatccttttttcataccaatcttatacacaccctatgtgggagggtattttggtaatgtgtaacaaaggatatgta 30058341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 53633681 - 53633635
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  53633681 ctcgtgagcttaact-cagttggtaaggataatgcataatatatgtaa 53633635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 1757733 - 1757672
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 368  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||| ||  |||||||||||||    
T  1757733 ctcgtgagcttaact-cagttggtaggaacaatgcataatatatgcaacgtctgggattcgaa 1757672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 21245792 - 21245865
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 382  Q
    |||||||||| ||| |||||||||| | ||||||||||||||||||  |||||| ||| ||||||| ||||||||    
T  21245792 cgtgagcttagctt-agttggtaaggacaatgcataatatatgtaaggtctggggttcaaacctcgaccatcaca 21245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 22486682 - 22486723
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  22486682 cgtgagcttaact-cagttggtaagaacaatgcataatatatg 22486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 19340436 - 19340508
Alignment:
Q  394 aaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 467  Q
    |||||||||||| |||  | ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||    
T  19340436 aaaatatagataaacatccttttttcataccactcttgtatacaccc-atgtgggaggttattttggtaatgtg 19340508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 35208887 - 35208854
Alignment:
Q  322 tcagttggtaagaataatgcataatatatgtaaa 355  Q
    ||||||||||||||||||| ||||||||||||||    
T  35208887 tcagttggtaagaataatgtataatatatgtaaa 35208854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 3573391 - 3573342
Alignment:
Q  304 gtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  3573391 gtactcgtgagcttaact-cagttggtaggaacaatgcataatatatgtaa 3573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 29059465 - 29059427
Alignment:
Q  311 tgagcttaacttcagttggtaagaataatgcataatatat 350  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29059465 tgagcttaa-ttcagttggtaagaataatgcataatatat 29059427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 41182670 - 41182624
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  41182670 ctcgtgagcttaact-cagttggtatgaataatgcataatatgtgtaa 41182624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 34083331 - 34083380
Alignment:
Q  304 gtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  34083331 gtactcatgagcttaact-cagatggtaagaacaatgcataatatatgtaa 34083380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 47719169 - 47719128
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  47719169 cgtgagcttaact-cagttggtaaggataatgcataatatatg 47719128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 9413808 - 9413841
Alignment:
Q  321 ttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||| ||||||||||||||||||    
T  9413808 ttcagttggtaagaacaatgcataatatatgtaa 9413841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 25271814 - 25271781
Alignment:
Q  321 ttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||||| ||||||||||||||||||    
T  25271814 ttcagttggtaagaacaatgcataatatatgtaa 25271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 27853347 - 27853415
Alignment:
Q  302 aggtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 370  Q
    |||| ||||||||||||||| ||||||||| ||| ||||||||||||||  || ||| ||||||||||||    
T  27853347 aggtcctcgtgagcttaact-cagttggtatgaacaatgcataatatatacaagatccgggattcgaacc 27853415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 32826756 - 32826723
Alignment:
Q  321 ttcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||||||||| |||||||||||||||||||||    
T  32826756 ttcagttggtaaaaataatgcataatatatgtaa 32826723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 51067955 - 51067915
Alignment:
Q  310 gtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  51067955 gtgagcttaact-cagttggtaagaataatacataatatatg 51067915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 467
Target Start/End: Original strand, 17816584 - 17816660
Alignment:
Q  391 gggaaaatatagatagacactc-ctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 467  Q
    |||||||||||||||||||| |  |||||||||||||| || |||| |||| |||||||||| || ||||||||||||    
T  17816584 gggaaaatatagatagacaccctttttttcataccacttttgtatacaccc-atgtaggaggttattttggtaatgtg 17816660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 5107309 - 5107266
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  5107309 ctcgtgagcttaact-cagttggtatgaataatgcataatatatg 5107266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 36623238 - 36623195
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 351  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  36623238 ctcgtgagcttaact-cagttgataagaataatgcataatatatg 36623195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 61632 - 61588
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  61632 cgtgagcttaact-cagttggtaaggataatgcataatgtatgtaa 61588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 3887856 - 3887780
Alignment:
Q  391 gggaaaatatagatagaca-ctcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 467  Q
    ||||||||||||||||||| |   ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||    
T  3887856 gggaaaatatagatagacatcatttttttcataccactcttgtatacaccc-atgtgggaggttattttggtaatgtg 3887780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 17806526 - 17806486
Alignment:
Q  307 ctcgtgagcttaacttcagttggtaagaataatgcataatat 348  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  17806526 ctcgtgagattaact-cagttggtaagaataatgcataatat 17806486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 36919310 - 36919354
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  36919310 cgtgagcttaact-cagttggtaagaacaatgtataatatatgtaa 36919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 41625193 - 41625237
Alignment:
Q  309 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 354  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||    
T  41625193 cgtgagcttagct-cagttggtatgaataatgcataatatatgtaa 41625237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University