View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_100 (Length: 321)
Name: NF1376_low_100
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_100 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 10477002 - 10477171
Alignment:
| Q |
69 |
agggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtcgttac |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10477002 |
agggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtcgttac |
10477101 |
T |
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| Q |
169 |
aaaatttcgtcattcttaaaaaagtgacatgtttttgtctttatcaaatttttaagcatgcagttttatt |
238 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
10477102 |
aaaatttcgtcattcataaaaaagtgacatgtttttgtcttgaccaaatttttaagcatgcagttttatt |
10477171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 10474627 - 10474732
Alignment:
| Q |
69 |
agggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtcgttac |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10474627 |
agggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgtttttgtcgttac |
10474726 |
T |
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| Q |
169 |
aaaatt |
174 |
Q |
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|||||| |
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| T |
10474727 |
aaaatt |
10474732 |
T |
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