View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_102 (Length: 321)
Name: NF1376_low_102
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 10476997 - 10477171
Alignment:
| Q |
64 |
aacaaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtc |
163 |
Q |
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| T |
10476997 |
aacaaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtc |
10477096 |
T |
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| Q |
164 |
gttacaaaatttcgtcattcttaaaaaagtgacatgtttttgtctttatcaaatttttaagcatgcagttttatt |
238 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
10477097 |
gttacaaaatttcgtcattcataaaaaagtgacatgtttttgtcttgaccaaatttttaagcatgcagttttatt |
10477171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 10474622 - 10474732
Alignment:
| Q |
64 |
aacaaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgttttcgtc |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10474622 |
aacaaagggtggacgagaaatcattactataattttgatatatccttacatccaattctattatttattttataaaggaataaataaatttgtttttgtc |
10474721 |
T |
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| Q |
164 |
gttacaaaatt |
174 |
Q |
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| T |
10474722 |
gttacaaaatt |
10474732 |
T |
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