View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_11 (Length: 643)

Name: NF1376_low_11
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_11
NF1376_low_11
[»] chr1 (13 HSPs)
chr1 (40-614)||(756233-756807)
chr1 (509-557)||(65342-65390)
chr1 (494-554)||(11751509-11751569)
chr1 (441-488)||(3022722-3022769)
chr1 (441-488)||(7287160-7287207)
chr1 (441-488)||(25412229-25412276)
chr1 (494-573)||(39737463-39737542)
chr1 (430-488)||(4402138-4402196)
chr1 (335-408)||(42323430-42323504)
chr1 (426-488)||(45377909-45377971)
chr1 (441-490)||(4362320-4362369)
chr1 (505-586)||(6212266-6212347)
chr1 (440-488)||(35718544-35718592)
[»] chr8 (8 HSPs)
chr8 (426-488)||(44652504-44652566)
chr8 (441-488)||(25107332-25107379)
chr8 (441-575)||(2510584-2510710)
chr8 (441-488)||(2374404-2374451)
chr8 (441-488)||(2620129-2620176)
chr8 (441-488)||(3457843-3457890)
chr8 (320-386)||(21019760-21019826)
chr8 (430-488)||(22738710-22738768)
[»] chr4 (10 HSPs)
chr4 (320-386)||(4435277-4435343)
chr4 (441-575)||(41819131-41819269)
chr4 (430-575)||(4576545-4576682)
chr4 (426-488)||(39721996-39722058)
chr4 (441-490)||(6892960-6893009)
chr4 (505-575)||(4435100-4435170)
chr4 (317-386)||(11432491-11432560)
chr4 (320-377)||(24014511-24014568)
chr4 (505-573)||(8956486-8956554)
chr4 (440-488)||(37665914-37665962)
[»] chr2 (9 HSPs)
chr2 (463-575)||(12677645-12677754)
chr2 (430-575)||(13560064-13560201)
chr2 (518-573)||(7599124-7599179)
chr2 (321-387)||(10057232-10057298)
chr2 (509-575)||(43898257-43898323)
chr2 (443-488)||(9716218-9716263)
chr2 (444-488)||(4816638-4816682)
chr2 (505-573)||(10057407-10057475)
chr2 (440-488)||(39848462-39848510)
[»] chr5 (8 HSPs)
chr5 (506-575)||(6391319-6391388)
chr5 (441-497)||(8570171-8570227)
chr5 (441-488)||(14830717-14830764)
chr5 (441-488)||(16885572-16885619)
chr5 (441-486)||(15530209-15530254)
chr5 (303-379)||(21961663-21961739)
chr5 (505-557)||(29089996-29090048)
chr5 (444-488)||(40514893-40514937)
[»] chr6 (1 HSPs)
chr6 (301-377)||(5423086-5423162)
[»] chr7 (1 HSPs)
chr7 (430-557)||(18793754-18793876)
[»] chr3 (4 HSPs)
chr3 (441-488)||(9503946-9503993)
chr3 (426-485)||(29563590-29563649)
chr3 (294-386)||(31132958-31133050)
chr3 (441-481)||(45613144-45613184)
[»] scaffold0036 (1 HSPs)
scaffold0036 (320-386)||(53072-53138)


Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 40 - 614
Target Start/End: Complemental strand, 756807 - 756233
Alignment:
Q  40 tatatatacacacacccttgtttaacctatattgaagtgaatctcacaacctttttatcacattcttcatacatcagtcaatcttgcatgtgatgttagt 139  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756807 tatatatacacacacccttatttaacctatatagaagtgaatctcacaacctttttatcacattcttcatacatcagtcaatcttgcatgtgatgttagt 756708  T
Q  140 agatgtgggattaggttaggataagttatgctctacaaggccaaaacttgatatgtcaaaaacttaaaggcctaagagtgatatgtggcttgtcatagac 239  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  756707 agatgtgggattaggttagtataagttatgctctacaaggccaaaacttgatatgtcaaaaacttaaaggcctaagagtgatatgtggcttctcatagac 756608  T
Q  240 ttgttttttaagcttgagtttaaccttttgaaaatatggtataacatcttatcttgtttagaagtttatttgatgttaatatctttaaattaacaatatg 339  Q
    |||||||| ||  |||||| | |||||||||||||||| |||||||| |||  || ||||||||||||||| ||||||||||||||||||||||||||||    
T  756607 ttgtttttcaaatttgagtctgaccttttgaaaatatgatataacatgttactttatttagaagtttatttaatgttaatatctttaaattaacaatatg 756508  T
Q  340 atataagcttaaatagattaacaaactaatagatcaatgaaattaaaaaccttttaatatttaacatgagcnnnnnnnagagaatttttaactatatacg 439  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  756507 atataagtttaaatagattaacaaattaatagatcaatgaaattaaaaaccttttaatatttaacatgagttttttttagagaatttttaactatatacg 756408  T
Q  440 atatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaactaacatatattaataagtttaaattactgaaaatgttaac 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  756407 atatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaactaatatatactaataagcttaaattactgaaaatgttaac 756308  T
Q  540 gaattgataatttaattcttagtacaaattataatacaatgatattactagtaaatacttttcttatggtctatg 614  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756307 gaatcgataatttaattcttagtacaaattataatacaatgatattactagtaaatacttttcttatggtctatg 756233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 65342 - 65390
Alignment:
Q  509 ttaataagtttaaattactgaaaatgttaacgaattgataatttaattc 557  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||||||    
T  65342 ttaataagcttaaattactgaaaatgttaacaaatttataatttaattc 65390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 11751569 - 11751509
Alignment:
Q  494 aaaaactaacatatattaataagtttaaattactgaaaatgttaacgaattgataatttaa 554  Q
    ||||||||| ||||| |||||||||||||||| |||||| |||||| |||| ||| |||||    
T  11751569 aaaaactaatatatactaataagtttaaattattgaaaaagttaacaaatttatattttaa 11751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 3022722 - 3022769
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    ||||||||||| |||| ||||||||||||| ||||| |||||||||||    
T  3022722 tatcatatttcaattctagtttataataatacatttaaatatgcaaaa 3022769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 7287207 - 7287160
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  7287207 tatcatatttctattctagtttataataatacatttatatatgcaaaa 7287160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 25412276 - 25412229
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  25412276 tatcatatttctattctagtttataataatacatttatatatgcaaaa 25412229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 573
Target Start/End: Original strand, 39737463 - 39737542
Alignment:
Q  494 aaaaactaacatatattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataa 573  Q
    ||||| |||| |||| ||||||| ||||||||||||||| |||||| ||||  || ||||||||  |||||||| |||||    
T  39737463 aaaaattaacgtatactaataagcttaaattactgaaaaagttaacaaatttttattttaattcaaagtacaaaatataa 39737542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 4402196 - 4402138
Alignment:
Q  430 actatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    ||||||||  |||||||||||| |||| | ||||||||||| ||||| |||||||||||    
T  4402196 actatatattatatcatatttcaattctaatttataataatacatttaaatatgcaaaa 4402138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 42323430 - 42323504
Alignment:
Q  335 atatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaaaac-cttttaatatttaacatga 408  Q
    |||||||||| | ||||||||| || || |||||||||||||||| ||||||  | ||||| |||||||||||||    
T  42323430 atatgatatatgtttaaatagactagcatactaatagatcaatgagattaaattctcttttgatatttaacatga 42323504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 45377909 - 45377971
Alignment:
Q  426 tttaactatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||  |||||||| || |||| ||||| ||||||| ||||| |||||||||||    
T  45377909 tttaactatatactgtatcatatatcaattctagtttgtaataatacatttaaatatgcaaaa 45377971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 4362320 - 4362369
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaaca 490  Q
    ||||||||||| |||  ||||||||||||| ||||| |||||||||||||    
T  4362320 tatcatatttcaattttagtttataataatacatttaaatatgcaaaaca 4362369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 586
Target Start/End: Complemental strand, 6212347 - 6212266
Alignment:
Q  505 tatattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataatacaatgatatta 586  Q
    |||||||||||  ||||||||| ||||| |||||| |||| ||||||||||||  ||| |||| | ||||| ||| ||||||    
T  6212347 tatattaataatcttaaattacagaaaaggttaacaaatttataatttaattcaaagtgcaaaatttaatataataatatta 6212266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 35718544 - 35718592
Alignment:
Q  440 atatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||| |||| ||||||| ||||| ||||| |||||||||||    
T  35718544 atatcatatttcaattctagtttatcataatacatttgaatatgcaaaa 35718592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 44652566 - 44652504
Alignment:
Q  426 tttaactatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    ||||||||||||   ||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  44652566 tttaactatatattgtatcatatttcaattctagtttataataatgcatttaaatatgcaaaa 44652504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 25107379 - 25107332
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  25107379 tatcatatttctattctagtttataataatacatttaaatatgcaaaa 25107332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 575
Target Start/End: Original strand, 2510584 - 2510710
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaactaacatatattaataagtttaaattactgaaaatgttaacg 540  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||||||        ||||| |||  |||| ||||||| ||||||||||||||| ||||||     
T  2510584 tatcatatttcaattctagtttataataatacatttaaatatgca--------aaaaattaatgtatactaataagcttaaattactgaaaaagttaaca 2510675  T
Q  541 aattgataatttaattcttagtacaaattataata 575  Q
     |||  || ||||||||  |||||||| |||||||    
T  2510676 catttttattttaattcaaagtacaaaatataata 2510710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 2374404 - 2374451
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  2374404 tatcatatttctattctagtttataataatacatttatatatgcaaaa 2374451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 2620176 - 2620129
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    ||||||||||| |||| ||||||||||||| ||||| |||||||||||    
T  2620176 tatcatatttcaattctagtttataataatacatttaaatatgcaaaa 2620129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 3457890 - 3457843
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  3457890 tatcatatttctattctagtttataataatacatttatatatgcaaaa 3457843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 21019760 - 21019826
Alignment:
Q  320 atctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaa 386  Q
    |||||||||| | |||| |||| |||| ||||||||| || | ||||||||||||||| ||||||||    
T  21019760 atctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatagatcaattaaattaaa 21019826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 22738710 - 22738768
Alignment:
Q  430 actatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    ||||||||  ||| |||||||| |||| ||||||||||||| ||||| |||||||||||    
T  22738710 actatatattataccatatttcaattctagtttataataatacatttaaatatgcaaaa 22738768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 4435343 - 4435277
Alignment:
Q  320 atctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaa 386  Q
    |||||||||| |||||| ||||||||| ||||||||| || ||||||||||||||||| | ||||||    
T  4435343 atctttaaataaacaatgtgatataagtttaaatagactagcaaactaatagatcaattagattaaa 4435277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 575
Target Start/End: Complemental strand, 41819269 - 41819131
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaac----taacatatattaataagtttaaattactgaaaatgtt 536  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||| ||||| ||| |||||     |||  |||| ||||||| ||||||||||||||| |||    
T  41819269 tatcatatttcaattctagtttataataatacatttaaatatacaaaaaaaaaaaaaaaaaattaatgtatactaataagcttaaattactgaaaaagtt 41819170  T
Q  537 aacgaattgataatttaattcttagtacaaattataata 575  Q
    |||  |||  || ||||||||  |||||||| |||||||    
T  41819169 aacatatttttattttaattcaaagtacaaaatataata 41819131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 575
Target Start/End: Complemental strand, 4576682 - 4576545
Alignment:
Q  430 actatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaactaacatatattaataagtttaaattactga 529  Q
    ||||||||  |||||||||||| |||| |||||||||||||  |||| ||||||||        ||||| ||| ||||| ||||||| |||||||||| |    
T  4576682 actatatattatatcatatttcaattctagtttataataataaatttaaatatgca--------aaaaattaatatatactaataagcttaaattactaa 4576591  T
Q  530 aaatgttaacgaattgataatttaattcttagtacaaattataata 575  Q
    ||| |||||| ||||  || ||||||||  |||||||| |||||||    
T  4576590 aaaagttaacaaatttttattttaattcaaagtacaaaatataata 4576545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 39722058 - 39721996
Alignment:
Q  426 tttaactatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||| ||| ||||||||| |||| ||||||||||||| ||||| ||||| |||||    
T  39722058 tttaactatatatgatttcatatttcaattctagtttataataatacatttaaatatacaaaa 39721996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 6893009 - 6892960
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaaca 490  Q
    ||||||||||| |||| ||||||||||||| ||||| |||||||||||||    
T  6893009 tatcatatttcaattctagtttataataatacatttaaatatgcaaaaca 6892960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 575
Target Start/End: Complemental strand, 4435170 - 4435100
Alignment:
Q  505 tatattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataata 575  Q
    |||| |||||||||||||||| |||||| |||||| |||| ||| ||||||||  |||| ||| |||||||    
T  4435170 tatactaataagtttaaattattgaaaaagttaacaaatttatattttaattcaaagtaaaaaatataata 4435100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 11432560 - 11432491
Alignment:
Q  317 aatatctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaa 386  Q
    ||||||||||||| |  ||| |||| |||| |||||||||||| | |||||||| |||||| ||||||||    
T  11432560 aatatctttaaatcagtaatgtgatctaagtttaaatagattagcgaactaatatatcaattaaattaaa 11432491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 24014511 - 24014568
Alignment:
Q  320 atctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaat 377  Q
    |||||||||| |  |||||||| |||  ||||||||| ||||||||||||||||||||    
T  24014511 atctttaaataagtaatatgatctaaatttaaatagactaacaaactaatagatcaat 24014568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 8956554 - 8956486
Alignment:
Q  505 tatattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataa 573  Q
    |||| |||||| || |||||||| |||| |||||| |||| ||||||||||||  |||||||| |||||    
T  8956554 tatactaataacttcaaattactaaaaaggttaacaaatttataatttaattcacagtacaaaatataa 8956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 37665962 - 37665914
Alignment:
Q  440 atatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||| ||| ||||||||||||||| || ||||| |||||||||||    
T  37665962 atatcatacttcaattccagtttataatcatacatttaaatatgcaaaa 37665914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 575
Target Start/End: Complemental strand, 12677754 - 12677645
Alignment:
Q  463 ataataatgcatttcaatatgcaaaacaaacaaaaactaacatatattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagt 562  Q
    |||||||| ||||| ||||||||||| ||| |||||   |  |||| ||||||  ||||||||||||||||| |||| |||| |||||||||||   |||    
T  12677754 ataataatacatttaaatatgcaaaaaaaaaaaaaa---aagtataataataatcttaaattactgaaaatgataacaaatttataatttaatttagagt 12677658  T
Q  563 acaaattataata 575  Q
    ||||| |||||||    
T  12677657 acaaaatataata 12677645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 575
Target Start/End: Original strand, 13560064 - 13560201
Alignment:
Q  430 actatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaactaacatatattaataagtttaaattactga 529  Q
    ||||||||| |||| ||||||| |||| | ||||||||||| ||||| ||| |||||||        || |||  |||| ||||||  ||||||||||||    
T  13560064 actatatactatattatatttcaattcaaatttataataatacatttaaatgtgcaaaa--------aattaatgtatactaataaaattaaattactga 13560155  T
Q  530 aaatgttaacgaattgataatttaattcttagtacaaattataata 575  Q
    ||| |||||| |||| ||| ||||||||  |||||||| |||||||    
T  13560156 aaaagttaactaattcatattttaattcaaagtacaaaatataata 13560201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 7599124 - 7599179
Alignment:
Q  518 ttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataa 573  Q
    ||||||||||||||| |||||| |||| ||||||||||||  |||||||| |||||    
T  7599124 ttaaattactgaaaaggttaacaaatttataatttaattcaaagtacaaaatataa 7599179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 10057232 - 10057298
Alignment:
Q  321 tctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaaa 387  Q
    ||||||||| |||||| ||||||||| ||||||||| || | || |||||||||||| | |||||||    
T  10057232 tctttaaataaacaatgtgatataagtttaaatagactagcgaattaatagatcaattagattaaaa 10057298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 575
Target Start/End: Original strand, 43898257 - 43898323
Alignment:
Q  509 ttaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataata 575  Q
    ||||||||||||||||||| |||| |||||| ||||  || ||||||||  |||||||| |||||||    
T  43898257 ttaataagtttaaattacttaaaaagttaacaaatttttattttaattcaaagtacaaaatataata 43898323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 9716263 - 9716218
Alignment:
Q  443 tcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||||    
T  9716263 tcatatttctattctagtttataataatacatttatatatgcaaaa 9716218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 4816682 - 4816638
Alignment:
Q  444 catatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||||    
T  4816682 catatttctattctagtttataataatacatttatatatgcaaaa 4816638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 10057407 - 10057475
Alignment:
Q  505 tatattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataa 573  Q
    |||| |||||||||||||| | |||||| |||||| |||| ||| ||||||||  |||||||| |||||    
T  10057407 tatactaataagtttaaataattgaaaaagttaacaaatttatattttaattcaaagtacaaaatataa 10057475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 39848510 - 39848462
Alignment:
Q  440 atatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||| |||| | ||||||||||| ||||| |||||||||||    
T  39848510 atatcatatttcaattctaatttataataatacattttaatatgcaaaa 39848462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 6391388 - 6391319
Alignment:
Q  506 atattaataagtttaaattactgaaaatgttaacgaattgataatttaattcttagtacaaattataata 575  Q
    ||||||||||| ||||||||||||||| ||||||||||   || ||||||||  |||||||| |||||||    
T  6391388 atattaataagcttaaattactgaaaaagttaacgaatgtttattttaattcaaagtacaaaatataata 6391319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 497
Target Start/End: Complemental strand, 8570227 - 8570171
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaa 497  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||||||||| ||| ||||    
T  8570227 tatcatatttcaattcaagtttataataatacatttaaatatgcaaaaaaaaaaaaa 8570171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 14830717 - 14830764
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  14830717 tatcatatttctattctagtttataataatacatttatatatgcaaaa 14830764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 16885572 - 16885619
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  16885572 tatcatatttctattctagtttataataatacatttatatatgcaaaa 16885619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 15530209 - 15530254
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaa 486  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||    
T  15530209 tatcatatttctattctagtttataataatacatttttatatgcaa 15530254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 21961739 - 21961663
Alignment:
Q  303 gtttatttgatgttaatatctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatga 379  Q
    |||||||| || || |||| ||||||| |  ||||||||| |   ||||||||| ||||||||||||||||||||||    
T  21961739 gtttatttcatctttatatatttaaataagtaatatgataaatatttaaatagactaacaaactaatagatcaatga 21961663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 557
Target Start/End: Complemental strand, 29090048 - 29089996
Alignment:
Q  505 tatattaataagtttaaattactgaaaatgttaacgaattgataatttaattc 557  Q
    |||||||||||  |||||||||| ||||| ||||| |||| ||||||||||||    
T  29090048 tatattaataaacttaaattactaaaaatattaacaaattaataatttaattc 29089996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 40514893 - 40514937
Alignment:
Q  444 catatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||| |||| ||||||||||||| ||||| |||||||||||    
T  40514893 catatttcaattctagtttataataatacatttaaatatgcaaaa 40514937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 5423162 - 5423086
Alignment:
Q  301 aagtttatttgatgttaatatctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaat 377  Q
    |||| ||||| || ||||||||||||||| || | | ||||||||  |||||||||| | |||||||||||||||||    
T  5423162 aagtctatttcatattaatatctttaaataaatattgtgatataaatttaaatagatgagcaaactaatagatcaat 5423086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 557
Target Start/End: Original strand, 18793754 - 18793876
Alignment:
Q  430 actatatacgatatcatatttctattccagtttataataatgcatttcaatatgcaaaacaaacaaaaactaacatatattaataagtttaaattactga 529  Q
    ||||||||  |||||||||||| |||| ||| ||||||||| ||||| |||||||||||     ||||| ||   |||| |||||||||||||| | |||    
T  18793754 actatatattatatcatatttcaattctagtgtataataatacatttaaatatgcaaaa-----aaaaattagtttatactaataagtttaaatgattga 18793848  T
Q  530 aaatgttaacgaattgataatttaattc 557  Q
    ||| |||||  |||  ||||||||||||    
T  18793849 aaaggttaataaatgtataatttaattc 18793876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 9503946 - 9503993
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaatatgcaaaa 488  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  9503946 tatcatatttctattctagtttataataatacatttatatatgcaaaa 9503993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 485
Target Start/End: Complemental strand, 29563649 - 29563590
Alignment:
Q  426 tttaactatatacgatatcatatttctattccagtttataataatgcatttcaatatgca 485  Q
    ||||||||||||   ||||||||||| |||| ||||||||||||| ||||| ||||||||    
T  29563649 tttaactatatattgtatcatatttcaattctagtttataataatacatttaaatatgca 29563590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 31132958 - 31133050
Alignment:
Q  294 tgtttagaagtttatttgatgttaatatctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaa 386  Q
    |||||| ||| |||||| || | || |||||||||| |  ||| |||| |||| ||||||| | || ||||||||||||||||||| ||||||    
T  31132958 tgtttaaaagcttatttcatatgaacatctttaaataagtaatgtgatctaagtttaaatatactatcaaactaatagatcaatgagattaaa 31133050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 481
Target Start/End: Complemental strand, 45613184 - 45613144
Alignment:
Q  441 tatcatatttctattccagtttataataatgcatttcaata 481  Q
    ||||||||||| |||| ||||||||||||||||||| ||||    
T  45613184 tatcatatttcaattctagtttataataatgcatttaaata 45613144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 53138 - 53072
Alignment:
Q  320 atctttaaattaacaatatgatataagcttaaatagattaacaaactaatagatcaatgaaattaaa 386  Q
    |||||||||| ||||||  ||| |||| |||||||||||||| |||||||| ||| || ||||||||    
T  53138 atctttaaataaacaattagatctaagtttaaatagattaacgaactaatatatcgattaaattaaa 53072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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