View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_116 (Length: 298)
Name: NF1376_low_116
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_116 |
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| [»] scaffold0191 (2 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 77 - 298
Target Start/End: Original strand, 29952 - 30173
Alignment:
| Q |
77 |
aaggactttgaaatgacgcggcactcgtcattttacaacttttcatacactgtaaatggggtgattcttcttcaaaagcattaaaacttcttgcactctg |
176 |
Q |
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| T |
29952 |
aaggactttgaaatgacgcggcactcgtcattttacaacttttcatacactgtaaatggggtgattcttcttcaaaagcattaaaacttcttgcactctg |
30051 |
T |
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| Q |
177 |
aggagtttgaaatttaatcggagctttcttagaaccactaccactctctatctgcacaattttattctcaaaaccattcttcgatttgctaactaaagga |
276 |
Q |
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| T |
30052 |
aggagtttgaaatttaatcggagctttcttagaaccactaccactctctatctgcacaattttattctcaaaaccattcttcgatttgctaactaaagga |
30151 |
T |
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| Q |
277 |
ggtgattcttcatcaaaaccat |
298 |
Q |
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| T |
30152 |
ggtgattcttcatcaaaaccat |
30173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 29860 - 29956
Alignment:
| Q |
180 |
agtttgaaatttaatcggagctttcttagaaccactaccactctctatctgcacaattttattctcaaaaccattcttcgatttgctaactaaagga |
276 |
Q |
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| T |
29860 |
agtttggaatttaaattgagcttgcttagcaccactatcactatctggttgcacaattatattctcaaaaccactattcgatctaccaactaaagga |
29956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 37569658 - 37569611
Alignment:
| Q |
229 |
tgcacaattttattctcaaaaccattcttcgatttgctaactaaagga |
276 |
Q |
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| T |
37569658 |
tgcacaattttattctcaaaaccatttttcaatctactaactaaagga |
37569611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 37570256 - 37570178
Alignment:
| Q |
180 |
agtttgaaatttaatcggagctttcttagaaccactaccactctctatctgcacaattttattctcaaaaccattcttc |
258 |
Q |
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| T |
37570256 |
agtttggaatttaattggagcttgcttagcaccaccgccactatctggttgcacaaatttactctcaaaaccattcttc |
37570178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 37569615 - 37569579
Alignment:
| Q |
77 |
aaggactttgaaatgacgcggcactcgtcattttaca |
113 |
Q |
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| T |
37569615 |
aaggactttgaaatgacgcagcactcgtctttttaca |
37569579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 37570164 - 37570084
Alignment:
| Q |
77 |
aaggactttgaaatgacgcggcactcgtcattttacaacttttcatacactgtaaatggggtgattcttcttcaaaagcat |
157 |
Q |
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| T |
37570164 |
aaggactttgaaacgaagcggaactcatcattttacaactatccataagctgtacatgaggcaattcttcatcaaaagcat |
37570084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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