View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_118 (Length: 295)
Name: NF1376_low_118
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_118 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 14999290 - 14999035
Alignment:
| Q |
30 |
ttgctaaacaaagtcaaaactttatagataaaataagaca--gaaaattagaaaatacatgatagaaaataacattagttagataatatgacaaacctga |
127 |
Q |
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| T |
14999290 |
ttgctaaacaaagtcaaaactttatagatcagataagacaaagaaaattagaaaatgcatgaaagaaaataacattagttagataatatgacaaacctga |
14999191 |
T |
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| Q |
128 |
gaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaat |
227 |
Q |
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| T |
14999190 |
gaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaat |
14999091 |
T |
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| Q |
228 |
tgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtat |
283 |
Q |
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| T |
14999090 |
tgttgaaggcatttgcaagcattgatttctccggaagtgtcagtttcctgaagtat |
14999035 |
T |
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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 29468054 - 29467881
Alignment:
| Q |
110 |
ataatatgacaaacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgc |
209 |
Q |
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||||||||||||||||||||||||| || ||| ||||| |||||| || ||| | |||| ||||||| ||||| |||||| | | |||||||||||| |
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| T |
29468054 |
ataatatgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggattgctctctttaactatctccaatgccttgacga |
29467955 |
T |
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| Q |
210 |
gattctctagagacaaattgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtat |
283 |
Q |
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| T |
29467954 |
tgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtat |
29467881 |
T |
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