View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_119 (Length: 295)
Name: NF1376_low_119
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_119 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 14999290 - 14999034
Alignment:
| Q |
30 |
ttgctaaacaaagtcaaaactttatagataaaataagaca--gaaaattagaaaatacatgatagaaaataacattagttagataatatgacaaacctga |
127 |
Q |
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| T |
14999290 |
ttgctaaacaaagtcaaaactttatagatcagataagacaaagaaaattagaaaatgcatgaaagaaaataacattagttagataatatgacaaacctga |
14999191 |
T |
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| Q |
128 |
gaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaat |
227 |
Q |
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| T |
14999190 |
gaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaat |
14999091 |
T |
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| Q |
228 |
tgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtatt |
284 |
Q |
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| T |
14999090 |
tgttgaaggcatttgcaagcattgatttctccggaagtgtcagtttcctgaagtatt |
14999034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 284
Target Start/End: Complemental strand, 29468054 - 29467880
Alignment:
| Q |
110 |
ataatatgacaaacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgc |
209 |
Q |
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||||||||||||||||||||||||| || ||| ||||| |||||| || ||| | |||| ||||||| ||||| |||||| | | |||||||||||| |
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| T |
29468054 |
ataatatgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggattgctctctttaactatctccaatgccttgacga |
29467955 |
T |
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| Q |
210 |
gattctctagagacaaattgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtatt |
284 |
Q |
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| T |
29467954 |
tgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtatt |
29467880 |
T |
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