View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_12 (Length: 632)

Name: NF1376_low_12
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_12
NF1376_low_12
[»] chr7 (21 HSPs)
chr7 (325-604)||(36221647-36221926)
chr7 (10-260)||(36221990-36222235)
chr7 (326-604)||(36217656-36217934)
chr7 (47-260)||(36217999-36218207)
chr7 (365-588)||(32727359-32727582)
chr7 (44-254)||(35938799-35939004)
chr7 (43-234)||(32727038-32727224)
chr7 (365-585)||(35981797-35982017)
chr7 (365-585)||(36003209-36003429)
chr7 (326-585)||(35946529-35946788)
chr7 (43-251)||(35976915-35977118)
chr7 (365-585)||(35977231-35977451)
chr7 (43-251)||(35998327-35998530)
chr7 (365-585)||(35998643-35998863)
chr7 (47-254)||(35981485-35981687)
chr7 (47-254)||(36002897-36003099)
chr7 (43-166)||(35957460-35957583)
chr7 (62-234)||(35946271-35946438)
chr7 (382-553)||(35939131-35939306)
chr7 (61-251)||(35951909-35952094)
chr7 (397-565)||(35957808-35957976)
[»] chr2 (2 HSPs)
chr2 (398-588)||(26328705-26328895)
chr2 (43-147)||(26329140-26329244)
[»] chr1 (4 HSPs)
chr1 (326-604)||(18117804-18118082)
chr1 (46-251)||(18125183-18125383)
chr1 (46-175)||(18117530-18117659)
chr1 (365-542)||(18125496-18125673)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 325 - 604
Target Start/End: Complemental strand, 36221926 - 36221647
Alignment:
Q  325 aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttacta 424  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36221926 aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaaggaacagtactcatcatggaagcaattgagttacta 36221827  T
Q  425 cgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctagga 524  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221826 catgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctagga 36221727  T
Q  525 cgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttct 604  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221726 tgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttct 36221647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 36222235 - 36221990
Alignment:
Q  10 ccacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222235 ccacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatag 36222136  T
Q  110 cttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||    
T  36222135 cttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaaatcaaattt 36222041  T
Q  210 tgagaatagagaacttcctaatgttttgacagccagcggaactccagcaca 260  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  36222040 tgataacagagaacttcctaatgttttgacagccagcggaactccagcaca 36221990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 326 - 604
Target Start/End: Complemental strand, 36217934 - 36217656
Alignment:
Q  326 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 425  Q
    ||||||||||||||||||| | ||||| |   ||||  ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||||    
T  36217934 aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctac 36217835  T
Q  426 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggac 525  Q
    |||| |||||||| | ||||||| || || |||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||| ||||||||| ||    
T  36217834 gtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcac 36217735  T
Q  526 gaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttct 604  Q
    ||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||| | |||||| | ||||||    
T  36217734 gaggataaacttttggccagatagtttacgtcttagatgaatttgtagttgctcaatgtcacagtggttactatcttct 36217656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 47 - 260
Target Start/End: Complemental strand, 36218207 - 36217999
Alignment:
Q  47 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 146  Q
    ||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |    
T  36218207 tctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcatctttcttct 36218108  T
Q  147 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 246  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||     || |||||||||||||||||| |||||||||||||  ||| | |||||||||    
T  36218107 gttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagc 36218013  T
Q  247 ggaactccagcaca 260  Q
    ||||||||||||||    
T  36218012 ggaactccagcaca 36217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 365 - 588
Target Start/End: Original strand, 32727359 - 32727582
Alignment:
Q  365 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 464  Q
    ||||||||||||||||  ||||| |||| | |||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||| || || |||| ||||    
T  32727359 gaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgactt 32727458  T
Q  465 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacg 564  Q
    | ||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||| || | |||||| ||||||| |||||||||||||  |||    
T  32727459 ttatcaaatctatcaactcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacg 32727558  T
Q  565 aatttgtagttgctcaatatcaaa 588  Q
    | ||||||| ||||||||||||||    
T  32727559 actttgtagctgctcaatatcaaa 32727582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 44 - 254
Target Start/End: Original strand, 35938799 - 35939004
Alignment:
Q  44 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 143  Q
    |||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||    
T  35938799 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatcatagcttaattttagtgcaggtaaaatatcattttgct 35938898  T
Q  144 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagcc 243  Q
    | |||||||| ||||| ||||||   |||||||| |||  ||||||     |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  35938899 tctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaatcaaattttgaaaacagagaacttcctaatgttttcacagcc 35938993  T
Q  244 agcggaactcc 254  Q
    || ||||||||    
T  35938994 agtggaactcc 35939004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 32727038 - 32727224
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 142  Q
    ||||||||||||||| | ||||||  |||||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||    
T  32727038 ataatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttc 32727137  T
Q  143 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 234  Q
    || |||||||| ||||| ||||||   ||||| || |||||||||||     |||||||||| ||||||||||||  ||||||| |||||||    
T  32727138 ttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaatcatattttgagaataaggaacttcgtaatgtt 32727224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 365 - 585
Target Start/End: Original strand, 35981797 - 35982017
Alignment:
Q  365 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 464  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||    
T  35981797 gaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactt 35981896  T
Q  465 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacg 564  Q
    ||||||||| |  ||||||||||||||||||||| ||||||||||  | |||||| |  || || | ||||||||| |  ||||||||||||||||||||    
T  35981897 tgatcaaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacg 35981996  T
Q  565 aatttgtagttgctcaatatc 585  Q
    | |||||||||||||||||||    
T  35981997 agtttgtagttgctcaatatc 35982017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 365 - 585
Target Start/End: Original strand, 36003209 - 36003429
Alignment:
Q  365 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 464  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||    
T  36003209 gaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactt 36003308  T
Q  465 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacg 564  Q
    ||||||||| |  ||||||||||||||||||||| ||||||||||  | |||||| |  || || | ||||||||| |  ||||||||||||||||||||    
T  36003309 tgatcaaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacg 36003408  T
Q  565 aatttgtagttgctcaatatc 585  Q
    | |||||||||||||||||||    
T  36003409 agtttgtagttgctcaatatc 36003429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 326 - 585
Target Start/End: Original strand, 35946529 - 35946788
Alignment:
Q  326 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 425  Q
    ||||||||||| ||||||| | ||||| |  ||| | | |||||||||||||||||||| | |||||||  ||||||||| |||||||||| |||||| |    
T  35946529 aatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggaggaacatcacccatcatcgaagcaattgcgttactgc 35946628  T
Q  426 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggac 525  Q
    |||| ||||| || | ||| ||| ||  | |||||||||| ||||||| |  ||| |||| ||| |||||||| |||||||||||||  |||||||  ||    
T  35946629 gtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacac 35946728  T
Q  526 gaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 585  Q
    ||  | ||||||||||||||||||||| |||||||||||| ||  ||||||| |||||||    
T  35946729 gactaaaaacttttgaccagaaagtttttgtcttagacgacttactagttgcacaatatc 35946788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 35976915 - 35977118
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 142  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35976915 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35977014  T
Q  143 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 242  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35977015 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35977109  T
Q  243 cagcggaac 251  Q
     ||||||||    
T  35977110 tagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 365 - 585
Target Start/End: Original strand, 35977231 - 35977451
Alignment:
Q  365 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 464  Q
    |||||||||| ||||| ||| | |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||    
T  35977231 gaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaactt 35977330  T
Q  465 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacg 564  Q
    | ||||||| |  ||| |||| ||| |||||||| |||||||||||||  |||||||  ||||  | ||||||||||||||||||||| ||||| |||||    
T  35977331 ttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtctgagacg 35977430  T
Q  565 aatttgtagttgctcaatatc 585  Q
    | ||  ||||||| |||||||    
T  35977431 acttactagttgcacaatatc 35977451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 35998327 - 35998530
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 142  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35998327 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35998426  T
Q  143 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 242  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35998427 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35998521  T
Q  243 cagcggaac 251  Q
     ||||||||    
T  35998522 tagcggaac 35998530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 365 - 585
Target Start/End: Original strand, 35998643 - 35998863
Alignment:
Q  365 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 464  Q
    |||||||||| ||||| ||| | |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||    
T  35998643 gaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaactt 35998742  T
Q  465 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacg 564  Q
    | ||||||| |  ||| |||| ||| |||||||| |||||||||||||  |||||||  ||||  | ||||||||||||||||||||| ||||| |||||    
T  35998743 ttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtctgagacg 35998842  T
Q  565 aatttgtagttgctcaatatc 585  Q
    | ||  ||||||| |||||||    
T  35998843 acttactagttgcacaatatc 35998863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 35981485 - 35981687
Alignment:
Q  47 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 146  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  147 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 246  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  35981585 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 35981679  T
Q  247 ggaactcc 254  Q
    ||||||||    
T  35981680 ggaactcc 35981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 36002897 - 36003099
Alignment:
Q  47 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 146  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  147 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 246  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  36002997 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 36003091  T
Q  247 ggaactcc 254  Q
    ||||||||    
T  36003092 ggaactcc 36003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 35957460 - 35957583
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 142  Q
    ||||||||||||||| | |||||||||||||||||| || |||| ||| |||||||||| |||||| ||||||||||  |||||||||||||||    ||    
T  35957460 ataatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatc 35957559  T
Q  143 ttttgttctaagttccaaatctca 166  Q
    ||||||||||| ||||| ||||||    
T  35957560 ttttgttctaaattccacatctca 35957583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 35946271 - 35946438
Alignment:
Q  62 gaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaa 161  Q
    ||||||||||||||||| || || | ||| |||||||||| |||||| ||||||||||  |||||||| |||||| |||||||||||||||| ||||| |    
T  35946271 gaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgttctaaattccaca 35946370  T
Q  162 tctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 234  Q
    |||||  ||| || ||||||  ||||||     | ||| |||||| |||||||| ||||||||| ||||||||    
T  35946371 tctcagagtccctaacgaattcccactt-----acttatatcaaagtttgagaagagagaacttgctaatgtt 35946438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 553
Target Start/End: Original strand, 35939131 - 35939306
Alignment:
Q  382 atacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaac 481  Q
    |||||| |||||| | ||| |||| |||||||| || ||||| ||||| ||||| |||| ||| | |||| ||   |||||||| ||||||| |  ||||    
T  35939131 atacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaac 35939230  T
Q  482 tcaatccattttgcacggtcatc----attccatatatcatctaggacgaggataaacttttgaccagaaagttta 553  Q
    ||||||||||||| ||| |||||    ||||||||| |||||||  ||||| | ||||||||||||||||||||||    
T  35939231 tcaatccattttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagttta 35939306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 35951909 - 35952094
Alignment:
Q  61 ggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaa 160  Q
    ||||||| | |||| |||||| || | |||||||| ||||| ||||||||||||||| |  ||||||||||||||| |||||| ||||||||| ||||||    
T  35951909 ggaaaaagaggcaatacaatgtcttagataggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaa 35952008  T
Q  161 atctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac 251  Q
    ||  ||  |||||| || |||  ||||||     | ||||||| || |||||||| || |||||||| |||| ||| |||||||| |||||    
T  35952009 atagcagagtctctgacaaattcccactt-----acttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 565
Target Start/End: Original strand, 35957808 - 35957976
Alignment:
Q  397 acccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgca 496  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| ||| ||  | |||||||||| ||||| |  | ||| |||| ||| ||||||    
T  35957808 acccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagccactttgca 35957907  T
Q  497 cggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacga 565  Q
    || |||||||||||||  |||||||  || |  | ||||||||||||||||||||| ||| | ||||||    
T  35957908 cgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagtttttgtttgagacga 35957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 398 - 588
Target Start/End: Complemental strand, 26328895 - 26328705
Alignment:
Q  398 cccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcac 497  Q
    |||||||| ||||||||  ||||||||||||| ||||||| || ||| |||||| || |||||||||| |||| || |  ||||||||||||||||| ||    
T  26328895 cccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatccattttgaac 26328796  T
Q  498 ggtcatcattccatatatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaa 588  Q
    ||| ||||| |||||||||||||| |||||| | |||||||| ||| ||||| |||||||| |||||| |   || |||||||||||||||    
T  26328795 ggttatcatcccatatatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcactaattgctcaatatcaaa 26328705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 26329244 - 26329140
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 142  Q
    ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |   |||||||||||||| ||||     
T  26329244 ataatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttg 26329145  T
Q  143 ttttg 147  Q
    |||||    
T  26329144 ttttg 26329140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 326 - 604
Target Start/End: Original strand, 18117804 - 18118082
Alignment:
Q  326 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 425  Q
    ||||||||||||||||||||| | ||| || | ||    ||||| ||||  |||| ||| || |||||| |||||||||| || ||||||||||| || |    
T  18117804 aatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaacagtacccatcatcgatgcaattgagttgctgc 18117903  T
Q  426 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggac 525  Q
    |||| ||| | |||||||| ||| || ||   |||||||| ||||||| |  |||||| ||||||||| |||  ||||||||||||||||||||||  ||    
T  18117904 gtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccattttacacaatcatcattccatatatcatctaacac 18118003  T
Q  526 gaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttct 604  Q
     || | |||| ||| |||| |||||||| |||| |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  18118004 aagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 18118082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 18125183 - 18125383
Alignment:
Q  46 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 145  Q
    |||||| ||||| | ||| ||||||||||| || ||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||||| |||| |      
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  146 tgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccag 245  Q
    |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||||||||||||||||| ||||||||||||||| | ||||| ||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctag 18125377  T
Q  246 cggaac 251  Q
     |||||    
T  18125378 tggaac 18125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 18117530 - 18117659
Alignment:
Q  46 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 145  Q
    ||||||||||||||  | ||  |||||||| || ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||||    
T  18117530 atctttgggatacatagcaatgtaagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttt 18117629  T
Q  146 tgttctaagttccaaatctcatggtctctt 175  Q
    ||||||||  |||| ||||||  |||||||    
T  18117630 tgttctaaagtccacatctcagagtctctt 18117659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 365 - 542
Target Start/End: Original strand, 18125496 - 18125673
Alignment:
Q  365 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 464  Q
    |||||||||| ||||| ||| || |||||| |||||||||| ||||||||||||||| ||||||| ||||| || | ||| ||| ||  |   |||||||    
T  18125496 gaaagaccttgcaaaacatatgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaactt 18125595  T
Q  465 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggacgaggataaacttttgac 542  Q
    | ||||||| |  |||||| ||||| |||||||| ||||||||||||| ||||||||  || || | |||||||||||    
T  18125596 ttatcaaatctttcaactcgatccactttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttgac 18125673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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