View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_122 (Length: 291)
Name: NF1376_low_122
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 506414 - 506244
Alignment:
| Q |
70 |
gcaataccatagacaaatatgataaaccaattatcctaactaagttttatgtttgcatttgcagttcaataattgaacaatttgctagcacagtttccaa |
169 |
Q |
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| T |
506414 |
gcaataccatagacaaatgtggtaaaccaattatcctaactaacttttatgtttgcatttgcagttcaataattgaacaatttgctaccacagtttccaa |
506315 |
T |
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| Q |
170 |
ccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatctttctttaaggagaatt |
240 |
Q |
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| T |
506314 |
ccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatctttctttaaggagaatt |
506244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 16703181 - 16703068
Alignment:
| Q |
127 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
226 |
Q |
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||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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| T |
16703181 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
16703082 |
T |
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| Q |
227 |
ctttaaggagaatt |
240 |
Q |
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| T |
16703081 |
ttttaaggagaatt |
16703068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 17677417 - 17677304
Alignment:
| Q |
127 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
226 |
Q |
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||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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| T |
17677417 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
17677318 |
T |
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| Q |
227 |
ctttaaggagaatt |
240 |
Q |
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| T |
17677317 |
ttttaaggagaatt |
17677304 |
T |
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