View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_126 (Length: 290)

Name: NF1376_low_126
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_126
NF1376_low_126
[»] chr5 (5 HSPs)
chr5 (29-256)||(1491682-1491904)
chr5 (29-130)||(1504446-1504547)
chr5 (29-125)||(1477681-1477777)
chr5 (29-118)||(1481792-1481881)
chr5 (29-126)||(1485528-1485627)
[»] chr1 (3 HSPs)
chr1 (29-120)||(44128260-44128351)
chr1 (29-120)||(44132465-44132556)
chr1 (29-120)||(44140887-44140978)
[»] chr7 (5 HSPs)
chr7 (29-123)||(5290078-5290172)
chr7 (29-123)||(5302143-5302237)
chr7 (29-123)||(5309780-5309874)
chr7 (29-123)||(5283955-5284049)
chr7 (29-123)||(5314597-5314691)
[»] chr3 (3 HSPs)
chr3 (36-116)||(37863716-37863796)
chr3 (60-116)||(37859726-37859782)
chr3 (60-116)||(39029635-39029691)
[»] chr2 (1 HSPs)
chr2 (29-125)||(24165431-24165527)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 1491682 - 1491904
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattcttttata 128  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |     ||    
T  1491682 acaaagcacatatcctgatttttactttaaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtatgc-----ta 1491776  T
Q  129 ttatttatgctgtaacctttgagtatgtaaaaactttgatcggaagggtacagcatacattgtgtatgtccaacaannnnnnnaacaaataggagtannn 228  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||       
T  1491777 ttatttatgttgtaacctttgagtatgtaaaaactttgatcagaagggtacagcatacattgtgtatgtccaacaatttttttaacaaataggagtattt 1491876  T
Q  229 nnnnnaaggcaacaaatagcagtattat 256  Q
         |||||||||||||||||||||||    
T  1491877 tttttaaggcaacaaatagcagtattat 1491904  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 1504446 - 1504547
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattcttttata 128  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||| || ||| |||    
T  1504446 acaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagtgttttttcata 1504545  T
Q  129 tt 130  Q
    ||    
T  1504546 tt 1504547  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 1477681 - 1477777
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctttt 125  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||  ||| || ||||||||||| ||||||||||||||||||||||||    
T  1477681 acaaagcacatatcctgatttttacttcaaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtattctttt 1477777  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 1481792 - 1481881
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagta 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || |||   || |||||||||||||| |||||||||||||||||    
T  1481792 acaaagcacatatcctgatttttactttaaaatcacaaacagtgagcataaagtcgaactcaaagaaaaatttcaacgcatgtgtaagta 1481881  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 1485528 - 1485627
Alignment:
Q  29 acaaagcacatatcctgatt--tttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctttta 126  Q
    ||||||||||||||||||||  | ||||| | |||| ||||||| || ||||| ||  | |||| ||| ||||| || ||||| ||||||||||||||||    
T  1485528 acaaagcacatatcctgatttctatacttcagaatcgcaaatagcgagcacaagacgcaactcagagagaaatttcagcgcatttgtaagtattctttta 1485627  T

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Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 44128260 - 44128351
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtatt 120  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  44128260 acaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44128351  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 44132465 - 44132556
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtatt 120  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  44132465 acaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44132556  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 44140887 - 44140978
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtatt 120  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  44140887 acaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44140978  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 5290172 - 5290078
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctt 123  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||    
T  5290172 acaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5290078  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 5302143 - 5302237
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctt 123  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||    
T  5302143 acaaagcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5302237  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 5309780 - 5309874
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| || |||||||||||||||||||    
T  5309780 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtattctt 5309874  T

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Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 5283955 - 5284049
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctt 123  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||||||||||||||||||    
T  5283955 acaaagcacgtatcctgatttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtattctt 5284049  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 5314597 - 5314691
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctt 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||||| ||||| || |||||||||||||||||||    
T  5314597 acaaagcacatatcctgatttttactttaaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5314691  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 37863796 - 37863716
Alignment:
Q  36 acatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaag 116  Q
    ||||||||||| ||||||||    |||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  37863796 acatatcctgacttttacttccgtatcacaaacagtgaacacaaaactgaactcagagaaaaattccagcgcatgtgtaag 37863716  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 37859782 - 37859726
Alignment:
Q  60 atcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaag 116  Q
    |||||||| |||||||| || |||||||||||||||||||| || ||||||||||||    
T  37859782 atcacaaacagtgaacataagactgagctcaaagaaaaatttcagcgcatgtgtaag 37859726  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 39029635 - 39029691
Alignment:
Q  60 atcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaag 116  Q
    |||||||||||||| ||||| || ||||| ||||||||||| || ||||||||||||    
T  39029635 atcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 24165527 - 24165431
Alignment:
Q  29 acaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgagctcaaagaaaaattccaacgcatgtgtaagtattctttt 125  Q
    ||||||||||||||||||||| ||||||| | ||||||| || || ||||| |   | |||||||||||||| |||||||| |||||||||| ||||    
T  24165527 acaaagcacatatcctgatttctactttagagtcacaaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtattatttt 24165431  T

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