View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_128 (Length: 286)
Name: NF1376_low_128
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_128 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 532341 - 532090
Alignment:
| Q |
7 |
tccaataatataactacaattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcaca--gggtcaaaccaaggcctagac |
104 |
Q |
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| T |
532341 |
tccaacaaaataactacaattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcacacagggtcaaaccaaggcctagac |
532242 |
T |
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| Q |
105 |
cggtgaaacaagggttttacgtacaaattttgtgtttgattatataatcgannnnnnnnnnctttctaagaaaatatatttatcaagcaataaagaagac |
204 |
Q |
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| T |
532241 |
cggtgaaacaagggttttacgtacaaattttgtgtttgattatataatcga-tttttttttctttttaagaaaatatatttatcaagcaataaagaagac |
532143 |
T |
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| Q |
205 |
aaaaccaatatgtagtgattgaaatgtttagtagtttgtctttaagacacttt |
257 |
Q |
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| T |
532142 |
aaaaccaatatgtagtgattgaaatgtttagtagtttgtctttaagacacttt |
532090 |
T |
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