View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_129 (Length: 285)
Name: NF1376_low_129
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_129 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 35113539 - 35113297
Alignment:
| Q |
11 |
taatacttcctatttagtgttttaccataacgaatatcagcatgtattttaatgtttatagactatagtt-aactattttttcttctgacatggattcat |
109 |
Q |
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| T |
35113539 |
taatactttctatttagtgttttaacataacgaaaatcagcatgtattttaatgtttatagactatagtttaactattttttcttctgacatggattcat |
35113440 |
T |
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| Q |
110 |
attgatatatataaatacgtacttattgcattatatgatgaatgatgcagatctattttgttcttgcattcaatatgtggtttttaggttccctcattcc |
209 |
Q |
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| T |
35113439 |
attgatata----aatacgtacttattgcattagatgatgaatgatgcagatctattttgttcttgcattcaatatgtggtttttaggttccctccttcc |
35113344 |
T |
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| Q |
210 |
actttaatttgaatttttatgcagatcaacaacttttataatctatg |
256 |
Q |
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| T |
35113343 |
actttaatttgaatttttatgcagatcaacaacttttataatctatg |
35113297 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 14455811 - 14455753
Alignment:
| Q |
22 |
atttagtgttttaccataacgaatatcagcatgtattttaatgtttatagactatagtt |
80 |
Q |
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| T |
14455811 |
atttagtattttaacataatgaaaatcagcatgtattttgatgtttataaactatagtt |
14455753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 13251297 - 13251388
Alignment:
| Q |
11 |
taatacttcctatttagtgttttaccataacgaatatcagcatgtattttaatgtttatagactatag-ttaactattttttcttctgacatg |
102 |
Q |
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|||||||| | ||||||||||||| |||| ||| | ||||||||||||| |||||| || ||||||| ||| ||| |||||||||||||||| |
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| T |
13251297 |
taatactttcaatttagtgttttaatataatgaaaaccagcatgtattttgatgtttttaaactatagtttatcta-tttttcttctgacatg |
13251388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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