View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_13 (Length: 621)

Name: NF1376_low_13
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_13
NF1376_low_13
[»] chr2 (8 HSPs)
chr2 (1-324)||(16488286-16488609)
chr2 (485-600)||(39142123-39142238)
chr2 (354-394)||(26611634-26611674)
chr2 (267-318)||(7630362-7630413)
chr2 (324-359)||(16488232-16488267)
chr2 (218-268)||(10618962-10619012)
chr2 (268-310)||(32777924-32777966)
chr2 (215-268)||(44439268-44439321)
[»] chr6 (7 HSPs)
chr6 (215-266)||(1485164-1485215)
chr6 (267-324)||(33136571-33136628)
chr6 (269-324)||(25195454-25195509)
chr6 (268-318)||(5724719-5724769)
chr6 (215-268)||(2234529-2234582)
chr6 (215-268)||(30926796-30926849)
chr6 (215-268)||(31305865-31305918)
[»] chr4 (11 HSPs)
chr4 (215-268)||(33843991-33844044)
chr4 (270-318)||(33560662-33560710)
chr4 (267-318)||(25318993-25319044)
chr4 (215-263)||(4243406-4243454)
chr4 (160-200)||(29632561-29632601)
chr4 (355-397)||(30592985-30593027)
chr4 (216-269)||(2206849-2206902)
chr4 (218-286)||(2635159-2635227)
chr4 (270-318)||(35065009-35065057)
chr4 (354-394)||(35728867-35728907)
chr4 (268-324)||(46344920-46344976)
[»] chr7 (8 HSPs)
chr7 (267-319)||(40796064-40796116)
chr7 (268-318)||(12306923-12306973)
chr7 (215-265)||(27571879-27571929)
chr7 (271-323)||(45004961-45005013)
chr7 (271-318)||(12306680-12306727)
chr7 (268-317)||(15903637-15903686)
chr7 (277-318)||(17111821-17111862)
chr7 (357-397)||(41364691-41364731)
[»] chr3 (8 HSPs)
chr3 (220-268)||(35058375-35058423)
chr3 (215-267)||(44958624-44958676)
chr3 (215-266)||(35264429-35264480)
chr3 (267-318)||(44958694-44958745)
chr3 (215-257)||(46853552-46853594)
chr3 (268-318)||(48410901-48410951)
chr3 (233-286)||(40147886-40147939)
chr3 (268-324)||(52925700-52925756)
[»] chr1 (2 HSPs)
chr1 (227-268)||(47892418-47892459)
chr1 (268-308)||(31362290-31362330)
[»] chr8 (1 HSPs)
chr8 (270-318)||(32927838-32927886)
[»] chr5 (1 HSPs)
chr5 (270-310)||(10898676-10898716)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 16488609 - 16488286
Alignment:
Q  1 taccaaaaggattaatcaatttaagatcaaatctagagtcaaaatccgttctaatcacgaacccaaacaaacaaaaatcacttttgggtctcccggaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16488609 taccaaaaggattaatcaatttaagatcaaatctagagtcaaaatccattctaatcacgaacccaaacaaacaaaaatcacttttgggtctcccggaagt 16488510  T
Q  101 gaatccaaacatgtactaagcaaaacactatcaccaatcaatacaagcatcttcagcataataagatcaaataaaaatgaagtttttatgcaagcataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  16488509 gaatccaaacatgtactaagcaaaacactatcaccaatcaatacaagcatcttcagcataataaaatcaaataaaaataaagtttttatgcaagcataat 16488410  T
Q  201 aaatacagctctagaataaatttgattgttataatcaattctagaatcaacagctccaatttctagctggaggcaaaatcaattctacacgagagcaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16488409 aaatacagctctagaataaatttgattgttataatcaattctagaatcaacagctccaatttctagctggaggcaaaatcaattctacacgagagcaacc 16488310  T
Q  301 aaccatgtcagaatcaatcataca 324  Q
    ||||||||||||||||||||||||    
T  16488309 aaccatgtcagaatcaatcataca 16488286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 485 - 600
Target Start/End: Complemental strand, 39142238 - 39142123
Alignment:
Q  485 gagagacagagagagtaacctagaaatgaaagtgaaagaggaaagtgtaaaggaaggactctggtcaaggnnnnnnnntgaagaaatggccaaaacgtct 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  39142238 gagagacagagagagtaacctagaaatgaaagtgaaagaggaaagtgtaaaggaaggactctggtcaaggaaaaaaaatgaagaaatggccaaaacgtct 39142139  T
Q  585 agtctatatatatagc 600  Q
    |||||||| |||||||    
T  39142138 agtctatagatatagc 39142123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 26611634 - 26611674
Alignment:
Q  354 aaacataccaaaatcaattttaagtcttcaaaatcgctttt 394  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  26611634 aaacatacaaaaatcaattttaagtcttcaaaatcactttt 26611674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 7630413 - 7630362
Alignment:
Q  267 ctggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    ||||||||||||||||||||||  || ||||||||| ||||||| |||||||    
T  7630413 ctggaggcaaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaat 7630362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 16488267 - 16488232
Alignment:
Q  324 aggcaaaattgaatccaatcaggaaccacaaaacat 359  Q
    ||||||||||||||||||||||||||| ||||||||    
T  16488267 aggcaaaattgaatccaatcaggaacctcaaaacat 16488232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 10618962 - 10619012
Alignment:
Q  218 aaatttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    |||||||| ||||| |||||||| ||||||||| ||||| |||||||||||    
T  10618962 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagct 10619012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 32777966 - 32777924
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtca 310  Q
    ||||||||||||||||||||||||| | ||||||| |||||||    
T  32777966 tggaggcaaaatcaattctacacgaaaacaaccaaacatgtca 32777924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 44439321 - 44439268
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    ||||||||||| ||||| |||||||| ||||||||| |||||||| || |||||    
T  44439321 aataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagct 44439268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 1485164 - 1485215
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctag 266  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  1485164 aataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctag 1485215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 33136571 - 33136628
Alignment:
Q  267 ctggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaatcataca 324  Q
    ||||||| |||||||||| ||| ||||||||||||| ||||||| ||||||| |||||    
T  33136571 ctggaggtaaaatcaattatactcgagagcaaccaaacatgtcaaaatcaattataca 33136628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 25195454 - 25195509
Alignment:
Q  269 ggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaatcataca 324  Q
    ||||||| |||||||| ||| ||| ||||||||| ||||||||||||||| |||||    
T  25195454 ggaggcagaatcaattatactcgatagcaaccaaacatgtcagaatcaattataca 25195509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 5724719 - 5724769
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    |||||||||||||||||||||  || |||| |||| |||||||||||||||    
T  5724719 tggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaat 5724769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 2234582 - 2234529
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    ||||||||||| ||||| |||||||||||||||||| |||| || ||| |||||    
T  2234582 aataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagct 2234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 30926796 - 30926849
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    ||||||||||| ||| | ||||||||||||||| || | |||||||||||||||    
T  30926796 aataaatttgagtgtaaaaatcaattctagaataaaaaactccaatttctagct 30926849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 31305865 - 31305918
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    ||||||||||| |||   |||||||||||||||||| ||||||||||| |||||    
T  31305865 aataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagct 31305918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 33844044 - 33843991
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    ||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||    
T  33844044 aataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagct 33843991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 33560662 - 33560710
Alignment:
Q  270 gaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  33560662 gaggcaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaat 33560710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 25319044 - 25318993
Alignment:
Q  267 ctggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||| |||||||    
T  25319044 ctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaat 25318993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 4243454 - 4243406
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttc 263  Q
    ||||||||||| ||| | |||||||||||||||||| ||||||||||||    
T  4243454 aataaatttgagtgtaaaaatcaattctagaatcaaaagctccaatttc 4243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 29632601 - 29632561
Alignment:
Q  160 aataagatcaaataaaaatgaagtttttatgcaagcataat 200  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  29632601 aataagatcaaataaaaatgaagttctaatgcaagcataat 29632561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 30593027 - 30592985
Alignment:
Q  355 aacataccaaaatcaattttaagtcttcaaaatcgcttttagc 397  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||    
T  30593027 aacataccgaaagcaattttaagtcttcaaaatcacttttagc 30592985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 2206902 - 2206849
Alignment:
Q  216 ataaatttgattgttataatcaattctagaatcaacagctccaatttctagctg 269  Q
    |||||||||| ||||| | ||||||||| |||||| ||||||||||| ||||||    
T  2206902 ataaatttgagtgttaaagtcaattctaaaatcaaaagctccaatttttagctg 2206849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 2635227 - 2635159
Alignment:
Q  218 aaatttgattgttataatcaattctagaatcaacagctccaatttctagctggaggcaaaatcaattct 286  Q
    |||||||| | ||| ||||||||||||| |||| ||||||||| |||||||  | ||| ||||||||||    
T  2635227 aaatttgagtcttaaaatcaattctagactcaaaagctccaatctctagcttcaagcataatcaattct 2635159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 35065057 - 35065009
Alignment:
Q  270 gaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    ||||||||||||||||||| ||| |||||||||  |||||| |||||||    
T  35065057 gaggcaaaatcaattctactcgaaagcaaccaaaaatgtcataatcaat 35065009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 35728907 - 35728867
Alignment:
Q  354 aaacataccaaaatcaattttaagtcttcaaaatcgctttt 394  Q
    |||||| |||||||||||||||| ||||||||||| |||||    
T  35728907 aaacatgccaaaatcaattttaattcttcaaaatcactttt 35728867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 46344920 - 46344976
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaatcataca 324  Q
    ||||||||||||||||| |||  || ||||||||| ||||||||||| ||| |||||    
T  46344920 tggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattataca 46344976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 40796064 - 40796116
Alignment:
Q  267 ctggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaatc 319  Q
    |||||||||||||||||| | | ||||||||||||| ||||||||||||||||    
T  40796064 ctggaggcaaaatcaattttgctcgagagcaaccaaacatgtcagaatcaatc 40796116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 12306973 - 12306923
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    ||||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  12306973 tggaggcaaaatcaattctactcaagagcaaccaaacatgtcaaaatcaat 12306923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 27571929 - 27571879
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttcta 265  Q
    |||||| |||| ||||| |||||||||||||||||| ||||||||||||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttcta 27571879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 45005013 - 45004961
Alignment:
Q  271 aggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaatcatac 323  Q
    |||||||||||||||||  ||||||||||||| ||||||| ||||||| ||||    
T  45005013 aggcaaaatcaattctattcgagagcaaccaaacatgtcaaaatcaattatac 45004961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 12306727 - 12306680
Alignment:
Q  271 aggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    ||||||||||||||||||  |||||||||||| ||||||| |||||||    
T  12306727 aggcaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaat 12306680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 15903637 - 15903686
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaa 317  Q
    ||||||||||||||||||| || || ||||||||| |||||||| |||||    
T  15903637 tggaggcaaaatcaattctgcatgaaagcaaccaaacatgtcaggatcaa 15903686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 17111862 - 17111821
Alignment:
Q  277 aatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    |||||||||||| ||| ||||||||| |||||||||||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcagaatcaat 17111821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 41364691 - 41364731
Alignment:
Q  357 cataccaaaatcaattttaagtcttcaaaatcgcttttagc 397  Q
    |||||||||||||||||||| |||||| |||| ||||||||    
T  41364691 cataccaaaatcaattttaattcttcataatcacttttagc 41364731  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 35058423 - 35058375
Alignment:
Q  220 atttgattgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    |||||| ||||| |||||||||||||||||| ||||| |||||||||||    
T  35058423 atttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagct 35058375  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 44958624 - 44958676
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctagc 267  Q
    |||||| |||| ||||| ||||| |||||||||||| ||||||||||||||||    
T  44958624 aataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagc 44958676  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 35264429 - 35264480
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctccaatttctag 266  Q
    ||||||||| | ||||| |||||||||||||||||| ||||| |||||||||    
T  35264429 aataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctag 35264480  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 44958694 - 44958745
Alignment:
Q  267 ctggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    |||||||||||||||||||  |  |||||||||||| |||||||||||||||    
T  44958694 ctggaggcaaaatcaattccccctgagagcaaccaaacatgtcagaatcaat 44958745  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 46853552 - 46853594
Alignment:
Q  215 aataaatttgattgttataatcaattctagaatcaacagctcc 257  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||    
T  46853552 aataaatttgagtgttaaaatcaattctagaatcaaaagctcc 46853594  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 48410901 - 48410951
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    ||||||||||||||||||||| ||| ||||| ||| ||| |||||||||||    
T  48410901 tggaggcaaaatcaattctactcgaaagcaatcaaacatctcagaatcaat 48410951  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 40147886 - 40147939
Alignment:
Q  233 aatcaattctagaatcaacagctccaatttctagctggaggcaaaatcaattct 286  Q
    |||||||||||||||||| |||||||| |||||||| || | | ||||||||||    
T  40147886 aatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattct 40147939  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 52925700 - 52925756
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaatcataca 324  Q
    ||||||||||||  |||||||  |||||||||||| ||||||| ||||||| |||||    
T  52925700 tggaggcaaaattgattctacgtgagagcaaccaaacatgtcaaaatcaattataca 52925756  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 47892418 - 47892459
Alignment:
Q  227 tgttataatcaattctagaatcaacagctccaatttctagct 268  Q
    ||||| |||||||||||||||||| |||| ||||||||||||    
T  47892418 tgttaaaatcaattctagaatcaaaagcttcaatttctagct 47892459  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 31362290 - 31362330
Alignment:
Q  268 tggaggcaaaatcaattctacacgagagcaaccaaccatgt 308  Q
    |||||||||||||||||||||| || ||||||||| |||||    
T  31362290 tggaggcaaaatcaattctacatgaaagcaaccaaacatgt 31362330  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 32927886 - 32927838
Alignment:
Q  270 gaggcaaaatcaattctacacgagagcaaccaaccatgtcagaatcaat 318  Q
    |||||||||||||||||||  || ||||||||| ||||||||| |||||    
T  32927886 gaggcaaaatcaattctactggaaagcaaccaaacatgtcagagtcaat 32927838  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 10898716 - 10898676
Alignment:
Q  270 gaggcaaaatcaattctacacgagagcaaccaaccatgtca 310  Q
    ||||||||||||||| ||| ||||||||||||| |||||||    
T  10898716 gaggcaaaatcaattttactcgagagcaaccaaacatgtca 10898676  T

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