View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_130 (Length: 283)
Name: NF1376_low_130
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 41488877 - 41488618
Alignment:
| Q |
7 |
gtttgaactatgtgactgccctctgctgtatgcttttacctacaatcgactgtgtttttgaattggttgcctctattaacgagaaagnnnnnnnnntaac |
106 |
Q |
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| T |
41488877 |
gtttgaactatgtgactgccctctgctgtatgcttttaaccacaatcgactgtgtttttgaattggttgcctctattaacgagaaaggaaaaaaa-taat |
41488779 |
T |
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| Q |
107 |
ggccacataagaatgattgattaattgattgctcacacatagaaccccctaaagcaataatcactctgggagcttcacagatattaccatttaatatgtt |
206 |
Q |
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| T |
41488778 |
ggccacataagaatgattgattaattgattgctcacacatagaaccccctatagcaataatcactccgggagcttcacagatattaacatttaatatgtt |
41488679 |
T |
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| Q |
207 |
tcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttc |
267 |
Q |
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| T |
41488678 |
ttaatttagatttattgaatgtatttatctaaacgtaaattttaaagaaagtaacctgttc |
41488618 |
T |
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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 34414388 - 34414297
Alignment:
| Q |
156 |
taaagcaataatcactctgggagcttcacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaatt |
247 |
Q |
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| T |
34414388 |
taaagccataatcactcctggagcttcacagatattagcatttaatatttttcaatttgaacttattgaatgtatttatctaagcgcaaatt |
34414297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 9436178 - 9436092
Alignment:
| Q |
7 |
gtttgaactatgtgactgccctctgctgtatgcttttacctacaatcgactgtgtttttgaattggttgcctctattaacgagaaag |
93 |
Q |
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| T |
9436178 |
gtttgaactatgtaattgccctctgttgtatgcttttacccaaaattgactgtgtttttttattagttgcctctattaacgagaaag |
9436092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 29081566 - 29081679
Alignment:
| Q |
156 |
taaagcaataatcactctgggagcttcacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaa |
255 |
Q |
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|||| |||||||||| | |||||| ||| |||||| |||||||||||||||||||| ||||| |||| |||||| ||||| |||||||| | ||||| |
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| T |
29081566 |
taaaacaataatcacacctggagctctacaaatattagcatttaatatgtttcaatttagacttattgaacgtatttgtctaagcgcaaattctgaagaa |
29081665 |
T |
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| Q |
256 |
attaacctgttccc |
269 |
Q |
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||| | ||||||| |
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| T |
29081666 |
gttagcttgttccc |
29081679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 20408338 - 20408442
Alignment:
| Q |
164 |
taatcactctgggagcttcacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacct |
263 |
Q |
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||||||||| |||||||||| |||||| |||| || ||||| ||||||| |||| | ||||||||||||||| ||||||||| | ||||||| ||| |
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| T |
20408338 |
taatcactcctggagcttcaccaatattagcattcaacatgttccaatttggacttgttcaatgtatttatctaagtgcaaattttgatgaaattagcct |
20408437 |
T |
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| Q |
264 |
gttcc |
268 |
Q |
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||||| |
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| T |
20408438 |
gttcc |
20408442 |
T |
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