View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_131 (Length: 281)

Name: NF1376_low_131
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_131
NF1376_low_131
[»] chr5 (8 HSPs)
chr5 (1-179)||(6296742-6296920)
chr5 (9-70)||(29814963-29815024)
chr5 (6-69)||(10635344-10635407)
chr5 (4-73)||(10707790-10707859)
chr5 (1-64)||(9860767-9860831)
chr5 (23-53)||(15024832-15024862)
chr5 (7-45)||(39995706-39995744)
chr5 (25-64)||(17898882-17898922)
[»] chr1 (20 HSPs)
chr1 (1-66)||(44751973-44752038)
chr1 (1-69)||(36472642-36472710)
chr1 (1-72)||(18635708-18635779)
chr1 (9-69)||(6871196-6871256)
chr1 (1-73)||(32336728-32336800)
chr1 (11-73)||(16934334-16934396)
chr1 (9-73)||(10799194-10799258)
chr1 (1-65)||(32423560-32423624)
chr1 (26-69)||(43965071-43965114)
chr1 (18-74)||(38487782-38487838)
chr1 (8-75)||(43183741-43183809)
chr1 (26-73)||(11098944-11098991)
chr1 (35-74)||(49294532-49294571)
chr1 (7-73)||(52678863-52678929)
chr1 (9-50)||(5267986-5268027)
chr1 (10-71)||(9454461-9454522)
chr1 (22-71)||(28308443-28308492)
chr1 (9-50)||(40009079-40009120)
chr1 (9-66)||(40172518-40172575)
chr1 (11-71)||(27845415-27845475)
[»] chr4 (17 HSPs)
chr4 (1-73)||(8456800-8456872)
chr4 (2-70)||(2097082-2097150)
chr4 (4-73)||(30979818-30979887)
chr4 (2-67)||(38272968-38273033)
chr4 (4-72)||(38450695-38450763)
chr4 (12-73)||(29728801-29728862)
chr4 (4-65)||(38020376-38020437)
chr4 (4-72)||(42687614-42687682)
chr4 (6-73)||(25391012-25391079)
chr4 (7-76)||(34702922-34702991)
chr4 (2-63)||(41594046-41594107)
chr4 (16-68)||(5251890-5251942)
chr4 (8-63)||(20228273-20228328)
chr4 (1-72)||(50289734-50289805)
chr4 (6-72)||(9524640-9524703)
chr4 (23-70)||(51285194-51285241)
chr4 (4-72)||(33801947-33802015)
[»] chr2 (12 HSPs)
chr2 (4-73)||(26009785-26009854)
chr2 (8-73)||(10429882-10429947)
chr2 (4-73)||(32103573-32103642)
chr2 (5-73)||(1652530-1652598)
chr2 (5-69)||(8734464-8734528)
chr2 (4-72)||(41508187-41508255)
chr2 (23-66)||(14195204-14195247)
chr2 (35-73)||(26849272-26849310)
chr2 (37-73)||(36959382-36959418)
chr2 (12-71)||(16452218-16452277)
chr2 (21-71)||(15646806-15646856)
chr2 (23-55)||(42334846-42334878)
[»] chr3 (11 HSPs)
chr3 (1-75)||(28590384-28590458)
chr3 (4-59)||(51569819-51569874)
chr3 (2-73)||(8790014-8790085)
chr3 (10-70)||(42529433-42529493)
chr3 (7-54)||(50574794-50574841)
chr3 (2-74)||(37897583-37897655)
chr3 (8-73)||(54135695-54135760)
chr3 (10-72)||(28409459-28409521)
chr3 (4-69)||(23768776-23768841)
chr3 (23-59)||(15328152-15328188)
chr3 (23-63)||(21498456-21498496)
[»] chr7 (11 HSPs)
chr7 (4-73)||(33084950-33085019)
chr7 (9-73)||(33872840-33872905)
chr7 (25-72)||(40778242-40778289)
chr7 (38-82)||(41437116-41437160)
chr7 (12-71)||(22812819-22812878)
chr7 (23-73)||(12272486-12272536)
chr7 (27-73)||(32002153-32002199)
chr7 (39-73)||(46976974-46977008)
chr7 (23-71)||(22896175-22896223)
chr7 (8-72)||(44184249-44184313)
chr7 (26-70)||(48310133-48310177)
[»] chr8 (15 HSPs)
chr8 (4-71)||(14239266-14239333)
chr8 (1-69)||(18069278-18069346)
chr8 (1-68)||(12136496-12136563)
chr8 (1-72)||(36665276-36665347)
chr8 (31-73)||(10995345-10995387)
chr8 (8-54)||(12020073-12020119)
chr8 (5-69)||(5431627-5431690)
chr8 (1-73)||(34453768-34453840)
chr8 (10-73)||(20472382-20472445)
chr8 (10-71)||(26055447-26055508)
chr8 (11-54)||(10412983-10413026)
chr8 (29-71)||(36772822-36772864)
chr8 (23-59)||(14768157-14768193)
chr8 (23-59)||(14770860-14770896)
chr8 (27-71)||(30005693-30005737)
[»] chr6 (5 HSPs)
chr6 (8-65)||(31957881-31957938)
chr6 (14-73)||(3797852-3797911)
chr6 (23-66)||(21537469-21537512)
chr6 (23-73)||(6958976-6959026)
chr6 (23-67)||(29169533-29169577)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 6296920 - 6296742
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccccatgaataaaatatgtctaatgtaataa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6296920 tttgtctgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccccatgaataaaatatgtctaatgtaataa 6296821  T
Q  101 acttttaatggcacattcccttctagtggaaggtgccaactggttcctaaaatctgagactcttccaataaaaacacgt 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  6296820 acttttaatggcacattcccttctagtagaaggtgccaactggttcctaaaatctgagacttttccaataataacacgt 6296742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 29814963 - 29815024
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacc 70  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29814963 ggtttgaacctaggacctccaactccttatcccttagctcaaaccaattgagctacccaacc 29815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 10635344 - 10635407
Alignment:
Q  6 ccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10635344 ccgggtttgaagccaggacctccaactccttatcccttagctcaaaccagttgagctacccaac 10635407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 10707790 - 10707859
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||| ||| || ||||| || |||||||||    
T  10707790 gtccgggtttaaactcagaacctcaaactccttatcccttagcttaaagcagttgagttatccaaccccc 10707859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9860767 - 9860831
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactcctt-atcccttagctcaaaccaattgagctac 64  Q
    |||||| | |||||||| ||| |||||||||||||| | |||||||||||||||| |||||||||    
T  9860767 tttgtctgagtttgaactcaggacctccaactcctttaacccttagctcaaaccagttgagctac 9860831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 15024832 - 15024862
Alignment:
Q  23 acctccaactccttatcccttagctcaaacc 53  Q
    |||||||||||||||||||||||||||||||    
T  15024832 acctccaactccttatcccttagctcaaacc 15024862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 39995706 - 39995744
Alignment:
Q  7 cgggtttgaacccagaacctccaactccttatcccttag 45  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  39995706 cgggtttgaacccaggacctcaaactccttatcccttag 39995744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 17898922 - 17898882
Alignment:
Q  25 ctccaactcctt-atcccttagctcaaaccaattgagctac 64  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  17898922 ctccaactcctttatcccttagctcgaaccaattgagctac 17898882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44751973 - 44752038
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctaccc 66  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  44751973 tttgtccgggtttgaacccagaacctccaaccccttatcccttagctcaaaccagttgagctaccc 44752038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36472642 - 36472710
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  36472642 tttgtccgggtttgaacccaggacctccaactccttatcccttagctcagaccagttgagctacccaac 36472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18635708 - 18635779
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||| ||||||||||||    
T  18635708 tttgtccggatttgaacccaggacctcaaactccttatcccttagctcagaccagttgaactacccaacccc 18635779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 6871256 - 6871196
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    ||||||||||||| || ||||| ||||||||||||| |||||||||||| |||||||||||    
T  6871256 ggtttgaacccaggacatccaagtccttatcccttaactcaaaccaattaagctacccaac 6871196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32336728 - 32336800
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||| ||||||||||||  |||| ||||||||||||||||| || |||| | ||||||||||||||||||    
T  32336728 tttgtcctggtttgaacccaagaccttcaactccttatcccttaacttaaacgagttgagctacccaaccccc 32336800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 16934334 - 16934396
Alignment:
Q  11 tttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||||||||||||||| || |||||| |||||||| | ||||| ||||||||||||    
T  16934334 tttgaacccagaacctccaactcattttcccttggctcaaacaacttgagttacccaaccccc 16934396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 10799258 - 10799194
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||||| | || ||||| ||||||||||||||||||| | ||||||||||||| ||||    
T  10799258 ggtttgaacccaggaacttcaactacttatcccttagctcaaactagttgagctacccaatcccc 10799194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32423560 - 32423624
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacc 65  Q
    ||||||||||||||||||||  | |||||||| |||||||||||| ||||||||  |||||||||    
T  32423560 tttgtccgggtttgaacccaagaactccaacttcttatcccttagttcaaaccagctgagctacc 32423624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 43965114 - 43965071
Alignment:
Q  26 tccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    ||||||| |||||| |||||||||||||||||||||||||||||    
T  43965114 tccaacttcttatctcttagctcaaaccaattgagctacccaac 43965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 38487782 - 38487838
Alignment:
Q  18 ccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccca 74  Q
    |||| ||||||| ||||||| |||||| |||||| || |||||||||||||||||||    
T  38487782 ccaggacctccatctccttaacccttaactcaaatcagttgagctacccaaccccca 38487838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 43183741 - 43183809
Alignment:
Q  8 gggtttgaacccagaacctccaactcc-ttatcccttagctcaaaccaattgagctacccaacccccat 75  Q
    |||||| ||||||  ||||| |||||| ||| || ||||||||||||| ||||||||||||||||||||    
T  43183741 gggttttaacccacgacctcgaactccattaacctttagctcaaaccagttgagctacccaacccccat 43183809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 11098991 - 11098944
Alignment:
Q  26 tccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||    
T  11098991 tccaactccttaacccttagctcaaacctgctgagctacccaaccccc 11098944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 49294571 - 49294532
Alignment:
Q  35 ttatcccttagctcaaaccaattgagctacccaaccccca 74  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  49294571 ttatcccttaactcaaaccagttgagctacccaaccccca 49294532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 52678863 - 52678929
Alignment:
Q  7 cgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||| ||||||| || |||||||||||||||||  ||||||||||  ||||| || ||||||||    
T  52678863 cgggttttaacccaggacttccaactccttatccctaggctcaaaccagctgagcgactcaaccccc 52678929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5267986 - 5268027
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatcccttagctcaa 50  Q
    ||||||||||||  |||||||||||||||||| |||||||||    
T  5267986 ggtttgaacccaagacctccaactccttatcctttagctcaa 5268027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 9454522 - 9454461
Alignment:
Q  10 gtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    ||||||| |||| |||| |||||||||||  |||||||||||||| ||||| ||| ||||||    
T  9454522 gtttgaatccaggaccttcaactccttatatcttagctcaaaccacttgagttactcaaccc 9454461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 28308443 - 28308492
Alignment:
Q  22 aacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    |||||||| ||| |||||||||||||||||  | ||||||||||||||||    
T  28308443 aacctccatctctttatcccttagctcaaattagttgagctacccaaccc 28308492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 40009079 - 40009120
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatcccttagctcaa 50  Q
    ||||||||| ||| |||||||||||||| |||||||||||||    
T  40009079 ggtttgaacgcaggacctccaactccttttcccttagctcaa 40009120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 40172575 - 40172518
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctaccc 66  Q
    ||||||||||||| |||||||||||||| ||||  ||||||||| | || ||||||||    
T  40172575 ggtttgaacccaggacctccaactccttttcccccagctcaaactagtttagctaccc 40172518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 27845475 - 27845415
Alignment:
Q  11 tttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    ||||||| ||||||||| |||||  | | |||||||||||| || ||||||||||||||||    
T  27845475 tttgaactcagaacctctaactctcttttccttagctcaaatcagttgagctacccaaccc 27845415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8456872 - 8456800
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  8456872 tttgtccgggtttgaacccaggacatccaactccttatcccttagctcaaaccagttgagctacccaagcccc 8456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 2097150 - 2097082
Alignment:
Q  2 ttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacc 70  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||    
T  2097150 ttgtccgggtttgaacccaggacctccaactccttaacccttagctcaaactagttgagctacccaacc 2097082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 30979887 - 30979818
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  30979887 gtccgggtttgagcccaagacctccaactccttatcccttagctcaaaccagttgagctacccaatcccc 30979818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 38272968 - 38273033
Alignment:
Q  2 ttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctaccca 67  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  38272968 ttgtccgggtttgaaccaagaacccccaacttcttatcccttagctcaaaccagttgagctaccca 38273033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 38450763 - 38450695
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||| |||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  38450763 gtccggatttgaacccagagcctccaacttcttaacccttagctcaaaccagttgagctacccaacccc 38450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 29728801 - 29728862
Alignment:
Q  12 ttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  29728801 ttgaaccctgaatctccaactccttaacccttagctcaaaccagttgagctacccaaccccc 29728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 38020437 - 38020376
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacc 65  Q
    |||||||||||||||  | ||||||||||||||| |||||||||||||||| ||||||||||    
T  38020437 gtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagctacc 38020376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 42687682 - 42687614
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||||||||||| ||| ||||| |||||||||||| |||| |||||||| |||||| ||||||||||    
T  42687682 gtccgggtttgaactcaggacctcgaactccttatcctttagatcaaaccagttgagcgacccaacccc 42687614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 25391079 - 25391012
Alignment:
Q  6 ccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||||  ||||||||||| || |||||||||||||||||  |||||||||||| ||||    
T  25391079 ccgggtttgaacccactacctccaactctttttcccttagctcaaaccagatgagctacccaatcccc 25391012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 34702922 - 34702991
Alignment:
Q  7 cgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccccatg 76  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||| ||  ||| ||||||||||| ||||    
T  34702922 cgggtttgaaaccagaaactccaactccttatcccttggctcaaatcagatgaactacccaacccgcatg 34702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 41594046 - 41594107
Alignment:
Q  2 ttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagcta 63  Q
    ||||| |||||||||||||| |||||||||| |||| |||||||| ||||||| ||||||||    
T  41594046 ttgtctgggtttgaacccagtacctccaacttcttaacccttagcacaaaccagttgagcta 41594107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 5251890 - 5251942
Alignment:
Q  16 acccagaacctccaactccttatcccttagctcaaaccaattgagctacccaa 68  Q
    |||||| |||||||||||||| |||||| |||||||||| |||||||||||||    
T  5251890 acccaggacctccaactccttttcccttggctcaaaccagttgagctacccaa 5251942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 20228328 - 20228273
Alignment:
Q  8 gggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagcta 63  Q
    |||||||||||||  ||||||||||||||| |||||||||||||| | ||||||||    
T  20228328 gggtttgaacccaagacctccaactccttaacccttagctcaaactagttgagcta 20228273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50289805 - 50289734
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||||||||||||||| || |||||||||| ||| | |||||| |||||||| || ||||||| ||||||    
T  50289805 tttgtccgggtttgaacctaggacctccaacttcttttgccttagttcaaaccacttaagctaccaaacccc 50289734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 9524703 - 9524640
Alignment:
Q  6 ccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||||||||||||| ||||   ||||||||| | ||||||||||||| ||||| |||||||||||    
T  9524703 ccgggtttgaacccaggacct---actccttattctttagctcaaaccacttgagttacccaacccc 9524640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 51285194 - 51285241
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctacccaacc 70  Q
    |||||||| || |||||||||||||||||| | |||||||||||||||    
T  51285194 acctccaattcattatcccttagctcaaactagttgagctacccaacc 51285241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 33801947 - 33802015
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||| ||||||||||||  ||||  ||||| ||||||||||||||||| || |||| |||| |||||||    
T  33801947 gtccaggtttgaacccaagaccttaaactcattatcccttagctcaaatcagttgaactactcaacccc 33802015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 26009854 - 26009785
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  26009854 gtccgggtttgaacccaggacctccaactctttatcccttggctcaaaccagttgagctacccaaccccc 26009785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 10429882 - 10429947
Alignment:
Q  8 gggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  10429882 gggtttgaaccaaagacctcctactccttatcccttagctcaaaccagttgagctacccaaccccc 10429947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 32103642 - 32103573
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||| ||||||||||||  ||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  32103642 gtccaggtttgaacccatgacctccaactcctcatcccttagctcaaactagttgagctacccaaccccc 32103573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 1652598 - 1652530
Alignment:
Q  5 tccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||| || |||||||| | ||||||||||||||||||||| ||||||||||||| ||||    
T  1652598 tccgggtttgaacctaggacctccaatttcttatcccttagctcaaaccagttgagctacccaatcccc 1652530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 8734528 - 8734464
Alignment:
Q  5 tccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    ||||| ||||||||||  |||||||||||||||||||| ||||||||||| || |||||||||||    
T  8734528 tccggatttgaacccaatacctccaactccttatccctcagctcaaaccagttaagctacccaac 8734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 41508187 - 41508255
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||||| ||||| | |||| |||||||    
T  41508187 gtccgggtttgaactcagaacctctaacttcttatcccttagctcaaatcaatttaactactcaacccc 41508255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 14195204 - 14195247
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctaccc 66  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  14195204 acctccaactccttaacccttagctcaaaccagttgagctaccc 14195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 26849272 - 26849310
Alignment:
Q  35 ttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  26849272 ttatcccttagctcaaaccagttgagctacccaaccccc 26849310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 36959418 - 36959382
Alignment:
Q  37 atcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||||||| ||||||||||||||||||    
T  36959418 atcccttagctcaaaccagttgagctacccaaccccc 36959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 16452218 - 16452277
Alignment:
Q  12 ttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    |||||||||  ||||||||||  | | |||||||||||||||| ||||||||||||||||    
T  16452218 ttgaacccaagacctccaacttttgaacccttagctcaaaccagttgagctacccaaccc 16452277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 15646856 - 15646806
Alignment:
Q  21 gaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    ||||||||||||||||| |  ||||||||||||| |||||||||| |||||    
T  15646856 gaacctccaactccttaacatttagctcaaaccagttgagctaccgaaccc 15646806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 42334846 - 42334878
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaa 55  Q
    ||||||||||||||||||| |||||||||||||    
T  42334846 acctccaactccttatcccgtagctcaaaccaa 42334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28590384 - 28590458
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccccat 75  Q
    ||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||    
T  28590384 tttgtccgggtttgaactcaggacctccaacaccttgtcccttagctcaaaccagttgagttacccaacccccat 28590458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 51569874 - 51569819
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattga 59  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51569874 gtccgagtttgaacccagaacctccaactccttttcccttagctcaaaccaattga 51569819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 8790014 - 8790085
Alignment:
Q  2 ttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||| |||||||||||||| |||||||||||  | ||||||||||||||||| ||||||| ||||||||||    
T  8790014 ttgtctgggtttgaacccaggacctccaactctgtgtcccttagctcaaaccagttgagctgcccaaccccc 8790085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 42529493 - 42529433
Alignment:
Q  10 gtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacc 70  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  42529493 gtttgaactcatgacctccaactccttatcccttagctcaaaccagctgagctacccaacc 42529433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 50574794 - 50574841
Alignment:
Q  7 cgggtttgaacccagaacctccaactccttatcccttagctcaaacca 54  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  50574794 cgggtttcaacccaggacctccaactccttatcccttagctcaaacca 50574841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 37897655 - 37897583
Alignment:
Q  2 ttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccca 74  Q
    ||||| |||||||||||||| ||||||||||| |||||| | ||| ||| ||| ||||||||||||| |||||    
T  37897655 ttgtctgggtttgaacccaggacctccaactctttatccttcagcccaatccagttgagctacccaatcccca 37897583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 54135760 - 54135695
Alignment:
Q  8 gggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||| |||||||| ||||| || ||||||||||| || |  |||||||||||||||    
T  54135760 gggtttgaacccaggacctccaattccttttctcttagctcaaatcattaaagctacccaaccccc 54135695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 28409459 - 28409521
Alignment:
Q  10 gtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||||||| | ||||||||||| |  ||||||||||||| ||| ||||| |||||||||||    
T  28409459 gtttgaacccgggacctccaactcatcttcccttagctcaacccagttgagttacccaacccc 28409521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 23768776 - 23768841
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    ||||| |||| |||| ||||||||||||| ||| |||| ||||||||||| ||||| | |||||||    
T  23768776 gtccgcgtttaaaccaagaacctccaacttcttttcccatagctcaaacctattgatccacccaac 23768841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 15328152 - 15328188
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattga 59  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  15328152 acctccaactccttattccttaactcaaaccaattga 15328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 21498456 - 21498496
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagcta 63  Q
    ||||||||||| |||||||||||||||||| | ||||||||    
T  21498456 acctccaactcgttatcccttagctcaaactagttgagcta 21498496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 33084950 - 33085019
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||| ||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  33084950 gtccaggttttaacccaggacctccaactccatatcccttagctcaaaccagttgagctacccaaccccc 33085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 33872840 - 33872905
Alignment:
Q  9 ggtttgaacccagaacctccaactccttatccc-ttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  33872840 ggtttgaacccaaaacctccaactccttttccctttagctcaaaccagttgagttacccaaccccc 33872905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 40778242 - 40778289
Alignment:
Q  25 ctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||    
T  40778242 ctccaactccttatcccttagttcaaaccagttcagctacccaacccc 40778289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 41437160 - 41437116
Alignment:
Q  38 tcccttagctcaaaccaattgagctacccaacccccatgaataaa 82  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||    
T  41437160 tcccttagctcaaaccagttgagctacccaaccccctagaataaa 41437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 22812878 - 22812819
Alignment:
Q  12 ttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    ||||||| || ||||||||||||||| ||||||||| |||||| ||||| ||| ||||||    
T  22812878 ttgaaccgaggacctccaactccttaacccttagctgaaaccagttgaggtactcaaccc 22812819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 12272486 - 12272536
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||||||| || ||| ||||||||| ||||| ||||||||||||    
T  12272486 acctccaactccttaaccattaactcaaaccagttgagttacccaaccccc 12272536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 32002153 - 32002199
Alignment:
Q  27 ccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||| ||||| |||||||||||||||| |||||||| |||||||||    
T  32002153 ccaacaccttaacccttagctcaaaccagttgagctaaccaaccccc 32002199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 46976974 - 46977008
Alignment:
Q  39 cccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||||| ||||||||||||||||||    
T  46976974 cccttagctcaaaccagttgagctacccaaccccc 46977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 22896223 - 22896175
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    |||||||||| |||| |||||||||||||||||| ||| ||| ||||||    
T  22896223 acctccaacttcttaacccttagctcaaaccaatcgaggtactcaaccc 22896175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 44184249 - 44184313
Alignment:
Q  8 gggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    |||||||||| ||  ||||||||||| ||| ||||||| |||||||| ||||| ||| |||||||    
T  44184249 gggtttgaacacatgacctccaactcattaacccttagttcaaaccagttgagttactcaacccc 44184313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 48310177 - 48310133
Alignment:
Q  26 tccaactccttatcccttagctcaaaccaattgagctacccaacc 70  Q
    |||||||| ||||| ||||||||||||||||||| ||||| ||||    
T  48310177 tccaactctttatctcttagctcaaaccaattgaactaccaaacc 48310133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 14239266 - 14239333
Alignment:
Q  4 gtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    |||| ||||| ||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  14239266 gtccaggtttaaacccaggacctccaactccttatcccctagctcagaccagttgagctacccaaccc 14239333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18069346 - 18069278
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    |||||||| ||||||||| |  |||| ||||||||||||||||| |||||| |||||||||||||||||    
T  18069346 tttgtccgagtttgaacctatgaccttcaactccttatcccttaactcaaatcaattgagctacccaac 18069278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12136563 - 12136496
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaa 68  Q
    ||||||||  ||||||||||| |||||||||| ||||| ||||||||||||||| ||||| |||||||    
T  12136563 tttgtccgactttgaacccagtacctccaacttcttattccttagctcaaaccagttgagttacccaa 12136496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36665276 - 36665347
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaacccc 72  Q
    ||||||||||||||||||||| | | ||| || |||| |||||||||||||||| || ||||||||||||||    
T  36665276 tttgtccgggtttgaacccagtatccccatctacttaacccttagctcaaaccagttaagctacccaacccc 36665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 10995387 - 10995345
Alignment:
Q  31 ctccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  10995387 ctccttatcccttggctcaaaccaattgagctacccaaccccc 10995345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 12020119 - 12020073
Alignment:
Q  8 gggtttgaacccagaacctccaactccttatcccttagctcaaacca 54  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||    
T  12020119 gggtttgaacccaggacctccaactccttatcccttaactcaaacca 12020073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 5431690 - 5431627
Alignment:
Q  5 tccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaac 69  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||| ||  |||||||||||||    
T  5431690 tccgagtttgaactcaga-cctccaactccttatcccttagctcaaatcagctgagctacccaac 5431627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34453768 - 34453840
Alignment:
Q  1 tttgtccgggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||||||||||| ||||  |||||| ||||||||||||||| |||| | || ||| ||||||||||||||    
T  34453768 tttgtccgggtttgatcccatgacctcctactccttatcccttaactcatatcagttgtgctacccaaccccc 34453840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 20472445 - 20472382
Alignment:
Q  10 gtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||||||||||  ||||||||| |||||||||||||||||  | |||| |||||||||||||    
T  20472445 gtttgaacccagagtctccaactctttatcccttagctcaaagtagttgaactacccaaccccc 20472382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 26055508 - 26055447
Alignment:
Q  10 gtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    |||||||||||  |||||||||||||||||||||| | ||||||| ||||  ||||||||||    
T  26055508 gtttgaacccatgacctccaactccttatcccttatcacaaaccagttgaaatacccaaccc 26055447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 10413026 - 10412983
Alignment:
Q  11 tttgaacccagaacctccaactccttatcccttagctcaaacca 54  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||    
T  10413026 tttgaactcagaacctctaactccttatccattagctcaaacca 10412983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 36772822 - 36772864
Alignment:
Q  29 aactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    ||||||||||| |||||||||||| | ||||||||||||||||    
T  36772822 aactccttatctcttagctcaaactagttgagctacccaaccc 36772864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 14768193 - 14768157
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattga 59  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  14768193 acctccaactccttattccttaactcaaaccaattga 14768157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 14770896 - 14770860
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattga 59  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  14770896 acctccaactccttattccttaactcaaaccaattga 14770860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 30005737 - 30005693
Alignment:
Q  27 ccaactccttatcccttagctcaaaccaattgagctacccaaccc 71  Q
    |||||| |||| ||||| ||||||||||||| |||||||||||||    
T  30005737 ccaactacttaacccttggctcaaaccaattaagctacccaaccc 30005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 31957938 - 31957881
Alignment:
Q  8 gggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacc 65  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  31957938 gggtttcaacccaggacctccaactccttatcccttagctcaaaccagtcgagctacc 31957881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 3797852 - 3797911
Alignment:
Q  14 gaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    |||||| ||||||| | ||||||| ||||||| ||||| ||||||||||| |||||||||    
T  3797852 gaaccctgaacctcgagctccttaacccttagttcaaatcaattgagctatccaaccccc 3797911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 21537512 - 21537469
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctaccc 66  Q
    ||||||||||||||| |||||||||||||| | |||||||||||    
T  21537512 acctccaactccttaacccttagctcaaactagttgagctaccc 21537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 6959026 - 6958976
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 73  Q
    ||||||| |||||||||| |||||||||||||  |||||||||||| ||||    
T  6959026 acctccatctccttatcctttagctcaaaccagctgagctacccaaacccc 6958976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 29169577 - 29169533
Alignment:
Q  23 acctccaactccttatcccttagctcaaaccaattgagctaccca 67  Q
    ||||||||||||||||||||| ||||||||   ||||||||||||    
T  29169577 acctccaactccttatcccttggctcaaacaggttgagctaccca 29169533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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