View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_132 (Length: 281)

Name: NF1376_low_132
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_132
NF1376_low_132
[»] chr3 (13 HSPs)
chr3 (5-268)||(6523095-6523358)
chr3 (9-268)||(6556331-6556590)
chr3 (5-268)||(7586028-7586291)
chr3 (9-268)||(6945425-6945684)
chr3 (5-268)||(6528626-6528889)
chr3 (9-268)||(6841190-6841443)
chr3 (5-268)||(6942093-6942356)
chr3 (1-268)||(6733831-6734098)
chr3 (1-268)||(6781565-6781832)
chr3 (9-226)||(8452834-8453051)
chr3 (41-187)||(6730371-6730517)
chr3 (134-268)||(8588080-8588214)
chr3 (50-94)||(6450452-6450496)
[»] scaffold0425 (1 HSPs)
scaffold0425 (5-268)||(9375-9638)
[»] scaffold1643 (1 HSPs)
scaffold1643 (9-268)||(327-586)
[»] scaffold2053 (1 HSPs)
scaffold2053 (150-268)||(13-131)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 6523095 - 6523358
Alignment:
Q  5 aagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcgaaatc 104  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||    
T  6523095 aagtgtgataatatgatagagttagatatacagagttgtgatagaattttggtaaatgaattgccgactagcctgaaaaagttactcctttggcaaaatc 6523194  T
Q  105 ggtacacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttgga 204  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| | |||||||| |||||||||||||||||||||| ||||||    
T  6523195 ggaacacggagttctccgtggaccaaaatttaatcaattttccctttcttgaagacttgaagttggatttcagaggctgtgtaaactgtccctctttgga 6523294  T
Q  205 tttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    ||||||||||||||||| |||| |    || || |||||||| |||  ||||||||||||||||    
T  6523295 tttacgttgctataattttcttcgtgatctttcaataaaaggctggtgctcctcctccttgcct 6523358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 6556331 - 6556590
Alignment:
Q  9 gtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcgaaatcggta 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  6556331 gtgataatatgatagagttagatatacagaattgtgatagaattttggtaaatgaattgccgactagcctgaaaaagttactccttcggcgaaatcggta 6556430  T
Q  109 cacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggattta 208  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||  |||||| ||| |||  || |||| ||| || ||||| | ||||||||||    
T  6556431 cacggagttctccgtgcaccaaaatttaatcaattttccctttcttgaagcgttggagttgaattggagtggctctgtgaaatgtccttctttggattta 6556530  T
Q  209 cgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    ||||||||||||| |||| |    || || |||||||| |||  ||||||||||||||||    
T  6556531 cgttgctataattttcttcgtgatctttcaataaaaggctggtgctcctcctccttgcct 6556590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 7586291 - 7586028
Alignment:
Q  5 aagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga-aat 103  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||     ||||||  ||| |||||  | || |||    
T  7586291 aagtgtgataatatgatagagttagatataaagagatgtgatagaattttggtaaatgaattgccgacaaatttgaaaagtttattccttt-gtgataat 7586193  T
Q  104 cggtacacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttgg 203  Q
    | |||||| ||||||||||||||||||| | |||||||| ||| ||||||||||  |||| | || ||||| |||||||||||||||||||||| |||||    
T  7586192 cagtacaccgagttctccgtggaccaaaatctaatcaatattctctttcttgaagtgttgaagtttgatttcagaggctgtgtaaactgtccctctttgg 7586093  T
Q  204 atttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    ||||||||||||||||||||||| |    || || ||||||||||||||||||||||||||||||    
T  7586092 atttacgttgctataattctcttcgtgatctttcaataaaaggatggcactcctcctccttgcct 7586028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 6945684 - 6945425
Alignment:
Q  9 gtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga-aatcggt 107  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||     |||||| |||| | |||  | || |||| ||    
T  6945684 gtgataatatgatagagttagatatacagagatgtgatagaattttggtaaatgaattgccgacaaatttgaaaaggttattacttt-gtgataatcagt 6945586  T
Q  108 acacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggattt 207  Q
    |||| ||||||||||||||||||| | |||||||| ||| ||||||||||||||||   |||||||| |||||||||||||||||||||| |||||||||    
T  6945585 acaccgagttctccgtggaccaaaatctaatcaatattctctttcttgaaaagttgaggttggatttcagaggctgtgtaaactgtccctctttggattt 6945486  T
Q  208 acgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    |||||||||||||| ||||   || || || |||||||||||||| |||||||||||||||    
T  6945485 acgttgctataattatcttgaaagactttcaataaaaggatggcattcctcctccttgcct 6945425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 6528626 - 6528889
Alignment:
Q  5 aagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga-aat 103  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||  |  |||||| |||| |||||  | || |||    
T  6528626 aagtgtgataatatgatagagttagatatacagacatgtgatagaattttggtaaatgaatttccgacgagtttgaaaaggttattccttt-gtgataat 6528724  T
Q  104 cggtacacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttgg 203  Q
    | |||||| ||||| ||| || | |||| | |||| |||||||||||||||||| ||||||  |||||||  || |||| ||| || ||||| | |||||    
T  6528725 cagtacaccgagttatccatgcagcaaaatgtaataaattttccctttcttgaagagttggggttggattggagtggctctgtgaaatgtccttctttgg 6528824  T
Q  204 atttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  6528825 atttacgttgctataattctctttggagactatcaataaaaggatggcactcctcctccttgcct 6528889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 6841190 - 6841443
Alignment:
Q  9 gtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga-aatcggt 107  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||  || |||||| ||||||||||  | || ||||  |    
T  6841190 gtgataatatgatagagttagatatacagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaaggttactcctt-tgtgataatcaat 6841288  T
Q  108 acacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggattt 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |      |||| ||| || ||||| | |||||||||    
T  6841289 acacggagttctccgtggaccaaaatttaatcaattttccctttcttgaagagttggaattggct------ggctctgtgaaatgtccttctttggattt 6841382  T
Q  208 acgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    | |||||||||||||||||   || || || ||| ||||||||  ||||||||||||||||    
T  6841383 aagttgctataattctcttcaaagactttcaatagaaggatggggctcctcctccttgcct 6841443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 6942356 - 6942093
Alignment:
Q  5 aagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcgaaatc 104  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||  || ||||||  ||| |||||      ||||    
T  6942356 aagtgtgataatatgatagagttagatatacagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaagtttattcctttgttataatc 6942257  T
Q  105 ggtacacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttgga 204  Q
     |||||| ||||||||| || |||||| | ||||||||||||||||||| ||| ||||||  ||||||||||  |||| |||  | ||||| | ||||||    
T  6942256 agtacaccgagttctccttgcaccaaaatgtaatcaattttccctttctcgaagagttggtgttggattttactggctttgtggaatgtccttctttgga 6942157  T
Q  205 tttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    |||||||||||||||||| ||||  |  || || ||||||||||||||||||||||||||||||    
T  6942156 tttacgttgctataattccctttctacactttcaataaaaggatggcactcctcctccttgcct 6942093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 6734098 - 6733831
Alignment:
Q  1 tcctaagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga 100  Q
    ||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||| ||  |  ||||||||||| |||||     |    
T  6734098 tcctaagtgtgataatatgatagagttagatatacggagatgtgatagaattttggtaaatgaattgcctaccagtttgaaaaagttagtcctttctgaa 6733999  T
Q  101 aatcggtacacggagttctccgtgga-ccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtcccttt 199  Q
    |||| |||||| |||||||| ||||| |||||| ||| |||| | | || |||||||  ||||| | |||||||  || || | |||||| ||||| | |    
T  6733998 aatcagtacaccgagttctctgtggagccaaac-ttagtcaactataccattcttgacgagttgaatttggattggagtggttttgtaaagtgtccttct 6733900  T
Q  200 ttggatttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    ||||||||  |||| |||||||||||| |    || || ||||||||||||||||||||||||||||||    
T  6733899 ttggatttgtgttgttataattctcttggtgatctttcaataaaaggatggcactcctcctccttgcct 6733831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 6781565 - 6781832
Alignment:
Q  1 tcctaagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga 100  Q
    ||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||| ||  |  ||||||||||| |||||     |    
T  6781565 tcctaagtgtgataatatgatagagttagatatacggagatgtgatagaattttggtaaatgaattgcctaccagtttgaaaaagttagtcctttctgaa 6781664  T
Q  101 aatcggtacacggagttctccgtgga-ccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtcccttt 199  Q
    |||| |||||| |||||||| ||||| |||||| ||| |||| | | || |||||||  ||||| | |||||||  || || | |||||| ||||| | |    
T  6781665 aatcagtacaccgagttctctgtggagccaaac-ttagtcaactataccattcttgacgagttgaatttggattggagtggttttgtaaagtgtccttct 6781763  T
Q  200 ttggatttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    ||||||||  |||| |||||||||||| |    || || ||||||||||||||||||||||||||||||    
T  6781764 ttggatttgtgttgttataattctcttggtgatctttcaataaaaggatggcactcctcctccttgcct 6781832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 8453051 - 8452834
Alignment:
Q  9 gtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcgaaatcggta 108  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||||||||||  || ||||||||||| || |||    ||| |||||    
T  8453051 gtgataatatcatagatttagatataaagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaaagttattcattcttgaaaaccggta 8452952  T
Q  109 cacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggattta 208  Q
    ||||||||||||||| || || | |||  ||||   | || ||||||||  |||||| |||||||| |  |||| | |||| ||||||  |||||||||     
T  8452951 cacggagttctccgtagagcagattttcgtcaacagtaccattcttgaagtgttggagttggatttgaatggctctttaaaatgtcccactttggatttg 8452852  T
Q  209 cgttgctataattctctt 226  Q
     |||||||||||||||||    
T  8452851 tgttgctataattctctt 8452834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 6730371 - 6730517
Alignment:
Q  41 tgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcgaaatcggtacacggagttctccgtggaccaaactttaatca 140  Q
    ||||| || |||||||||||||||||||||||| || ||||||||||| |||||  |  || ||||||||   |||||||| |||| ||||||||  |||    
T  6730371 tgtgaaagcattttggtaaatgaattgccgactagcttgaaaaagttagtcctttgggaaagtcggtacattaagttctccttggagcaaacttttctca 6730470  T
Q  141 attttccctttcttgaaaagttggaattggattttagaggctgtgta 187  Q
    |   | ||  ||||||| ||||||| || ||||||||||||| ||||    
T  6730471 acaataccaatcttgaagagttggagtttgattttagaggctttgta 6730517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 8588214 - 8588080
Alignment:
Q  134 ttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggatttacgttgctataattctctttggagcc 233  Q
    |||||||||||| | ||||||||| ||||| | ||||||||||  ||||  ||  | ||||||| ||||||| | |||||| ||||||||||  |||  |    
T  8588214 ttaatcaattttacatttcttgaagagttgtatttggattttactggcttagtggagtgtccctctttggatctgcgttgccataattctctccggaaac 8588115  T
Q  234 tatctataaaaggatggcactcctcctccttgcct 268  Q
    | || ||||||||||||| ||||| ||||||||||    
T  8588114 tttcaataaaaggatggcgctcctactccttgcct 8588080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 6450452 - 6450496
Alignment:
Q  50 attttggtaaatgaattgccgactggcctgaaaaagttactcctt 94  Q
    |||||||||||||||||||||||| || ||||||||||| |||||    
T  6450452 attttggtaaatgaattgccgactagcttgaaaaagttagtcctt 6450496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 9375 - 9638
Alignment:
Q  5 aagtgtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcgaaatc 104  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||  || ||||||  |||||||||  || |||||    
T  9375 aagtgtgataatatgatagagttagatatacaaagttgtgatagaattttggtaaatgaattgccgaccagcttgaaaagtttactcctttggcaaaatc 9474  T
Q  105 ggtacacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttgga 204  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||||||||||  |||| ||||||||||||  |||| |||  | ||||||| ||||||    
T  9475 ggtacactgagttctctgtggaccaaaatttaatcaattttccctttcttgaatcgttgcaattggattttactggctttgtggaatgtccctctttgga 9574  T
Q  205 tttacgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    | ||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||    
T  9575 tctacgttgctataattctctttggagactatcaatacaaggatggcattcctcctccttgcct 9638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 586 - 327
Alignment:
Q  9 gtgataatatgatagagttagatataaagaattgtgatagaattttggtaaatgaattgccgactggcctgaaaaagttactccttcagcga-aatcggt 107  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||  || |||||| |||| |||||  | || |||| ||    
T  586 gtgataatatgatagagttagatataaggagatgtgatagaattttggtaaatgaattgtcgaccagcttgaaaaggttattccttt-gtgataatcagt 488  T
Q  108 acacggagttctccgtggaccaaactttaatcaattttccctttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggattt 207  Q
    |||| |||||||||  | |||||| ||||||||||||||||||||||||| ||||| ||||||||||||  |||| |||  | ||||||| ||||||| |    
T  487 acaccgagttctccccgcaccaaaatttaatcaattttccctttcttgaagagttgcaattggattttactggctttgtggaatgtccctctttggatct 388  T
Q  208 acgttgctataattctctttggagcctatctataaaaggatggcactcctcctccttgcct 268  Q
    || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  387 acattgctataattctctttggagactatcaataaaaggatggcactcctcctccttgcct 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 13 - 131
Alignment:
Q  150 ttcttgaaaagttggaattggattttagaggctgtgtaaactgtccctttttggatttacgttgctataattctctttggagcctatctataaaaggatg 249  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  13 ttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatttacgttgctataattctctttggagactatcaataaaaggatg 112  T
Q  250 gcactcctcctccttgcct 268  Q
    |||||| ||||| ||||||    
T  113 gcactcatcctcgttgcct 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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