View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_139 (Length: 267)
Name: NF1376_low_139
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_139 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 40572058 - 40572131
Alignment:
| Q |
194 |
ctggagtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgc |
267 |
Q |
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| T |
40572058 |
ctggagtatcaatagcctcgtgattggacaaattgatcgtcgaagctggattggtattcgccagaattgttcgc |
40572131 |
T |
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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 19913564 - 19913637
Alignment:
| Q |
194 |
ctggagtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgc |
267 |
Q |
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| T |
19913564 |
ctggagtatcaatagcctcgtgattggacaaattgatcgtcgaagctggattggtattcgccagaattgttcgc |
19913637 |
T |
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Target: scaffold0130 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 18757 - 18830
Alignment:
| Q |
194 |
ctggagtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgc |
267 |
Q |
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| T |
18757 |
ctggagtatcaatagcctcgtgtttggacaaatcgatcatcgaagctggattggtattcgccagaattgttcgc |
18830 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 24090932 - 24090995
Alignment:
| Q |
128 |
ctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcctcctcc |
191 |
Q |
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| T |
24090932 |
ctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcc |
24090995 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 24086870 - 24086933
Alignment:
| Q |
128 |
ctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcctcctcc |
191 |
Q |
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| T |
24086870 |
ctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcc |
24086933 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 10776629 - 10776701
Alignment:
| Q |
195 |
tggagtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgc |
267 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||| |||| |
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| T |
10776629 |
tggagtatcaatagcctcgtgattggacaaattgatcttcgaagctggattgatattcgctagaattgctcgc |
10776701 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 36283924 - 36284015
Alignment:
| Q |
30 |
atacctgaattattgtgcaagctgattgtgataataatattcaattaaattccatcaaattagtacttttagtaagcaatttccaactagatatggatct |
129 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36283924 |
atacctgaattattgtgcaggctgattgtgataataatatttatt----------caaattagcacttttagtaagcaatttccaactagatatggatct |
36284013 |
T |
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