View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_142 (Length: 262)
Name: NF1376_low_142
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_142 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 11668 - 11518
Alignment:
| Q |
7 |
tagattattctatttaggatgagtcgattttaattgtaataagcatgaagtgtcactctagaattcagtagaattctgttatgccatgttctatatgcat |
106 |
Q |
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| T |
11668 |
tagattcttctatttaggatgagtcgattttaattgtaataagcatgaaatgtcactctagaattcaggagaattctgttatgccatgttctatatgcat |
11569 |
T |
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| Q |
107 |
tgtaaaataatctatgatgaaaagtatgaagttaacctagacgaatagcaa |
157 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11568 |
tgtaaaataatctatgatgaaaagtatgaagttaccctagacgaatagcaa |
11518 |
T |
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