View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_149 (Length: 253)

Name: NF1376_low_149
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_149
NF1376_low_149
[»] chr7 (17 HSPs)
chr7 (1-117)||(46818630-46818746)
chr7 (136-237)||(46818500-46818601)
chr7 (160-235)||(31235878-31235953)
chr7 (160-235)||(6001937-6002012)
chr7 (160-232)||(36143782-36143853)
chr7 (162-235)||(35667318-35667390)
chr7 (160-234)||(20116499-20116572)
chr7 (160-234)||(23425459-23425532)
chr7 (160-235)||(1485343-1485417)
chr7 (178-232)||(43369855-43369908)
chr7 (160-217)||(2843332-2843388)
chr7 (160-229)||(3860868-3860935)
chr7 (166-235)||(32522013-32522081)
chr7 (163-216)||(32684604-32684656)
chr7 (160-217)||(35496280-35496336)
chr7 (175-235)||(42067147-42067206)
chr7 (175-235)||(48207833-48207892)
[»] chr4 (23 HSPs)
chr4 (160-246)||(35965050-35965136)
chr4 (163-233)||(18139001-18139071)
chr4 (163-233)||(49126214-49126284)
chr4 (160-235)||(21090081-21090155)
chr4 (160-235)||(51317914-51317988)
chr4 (160-217)||(38706815-38706871)
chr4 (175-235)||(12265398-12265458)
chr4 (160-235)||(34024523-34024597)
chr4 (177-228)||(35261137-35261187)
chr4 (160-217)||(2115693-2115749)
chr4 (175-234)||(2624441-2624500)
chr4 (160-227)||(1008223-1008289)
chr4 (160-235)||(8009447-8009520)
chr4 (160-235)||(10359633-10359707)
chr4 (160-235)||(10389840-10389914)
chr4 (160-235)||(31381758-31381832)
chr4 (163-217)||(25273811-25273864)
chr4 (163-217)||(43154126-43154179)
chr4 (160-217)||(9528983-9529039)
chr4 (160-217)||(56194527-56194583)
chr4 (160-196)||(14183731-14183767)
chr4 (162-217)||(23100617-23100673)
chr4 (164-235)||(46991216-46991287)
[»] chr3 (21 HSPs)
chr3 (160-246)||(46178490-46178576)
chr3 (161-233)||(37169145-37169217)
chr3 (160-229)||(38440670-38440738)
chr3 (160-215)||(22802935-22802990)
chr3 (175-234)||(47980750-47980809)
chr3 (175-234)||(47990037-47990096)
chr3 (175-234)||(47999324-47999383)
chr3 (175-234)||(48008611-48008670)
chr3 (160-217)||(4172480-4172536)
chr3 (164-217)||(17237720-17237772)
chr3 (160-217)||(25631632-25631688)
chr3 (162-235)||(39917483-39917555)
chr3 (160-235)||(46934556-46934630)
chr3 (160-217)||(25162350-25162405)
chr3 (160-217)||(3850560-3850616)
chr3 (162-235)||(29503378-29503450)
chr3 (160-217)||(35499306-35499362)
chr3 (160-217)||(36906035-36906091)
chr3 (160-196)||(2342405-2342441)
chr3 (160-196)||(4178478-4178514)
chr3 (175-203)||(16235323-16235351)
[»] chr8 (14 HSPs)
chr8 (175-237)||(15597251-15597312)
chr8 (175-233)||(33342375-33342433)
chr8 (160-237)||(16794216-16794292)
chr8 (160-235)||(35580381-35580455)
chr8 (160-234)||(28239756-28239830)
chr8 (159-235)||(11725604-11725679)
chr8 (163-235)||(43192432-43192503)
chr8 (175-235)||(11196828-11196887)
chr8 (175-217)||(9498707-9498748)
chr8 (175-246)||(39153217-39153291)
chr8 (160-217)||(9619463-9619519)
chr8 (175-236)||(33298794-33298854)
chr8 (161-217)||(17949171-17949226)
chr8 (175-235)||(19876150-19876209)
[»] chr6 (16 HSPs)
chr6 (160-246)||(34489164-34489252)
chr6 (160-235)||(33543706-33543780)
chr6 (160-217)||(33740683-33740739)
chr6 (163-235)||(23947404-23947475)
chr6 (160-235)||(33109750-33109824)
chr6 (160-217)||(8196512-8196568)
chr6 (175-220)||(12165772-12165816)
chr6 (160-235)||(8028204-8028279)
chr6 (160-235)||(16419074-16419149)
chr6 (160-234)||(4468475-4468548)
chr6 (160-206)||(12652856-12652901)
chr6 (160-197)||(8266551-8266588)
chr6 (160-217)||(8496881-8496937)
chr6 (160-229)||(17237377-17237445)
chr6 (160-217)||(25064151-25064207)
chr6 (175-246)||(25337501-25337572)
[»] chr1 (20 HSPs)
chr1 (160-234)||(18569397-18569471)
chr1 (161-235)||(34519054-34519127)
chr1 (160-246)||(39987310-39987395)
chr1 (160-235)||(14545440-14545514)
chr1 (160-235)||(38520620-38520694)
chr1 (160-217)||(19716002-19716058)
chr1 (160-217)||(28035059-28035115)
chr1 (160-235)||(25406370-25406445)
chr1 (7-75)||(36882892-36882960)
chr1 (160-227)||(27872659-27872725)
chr1 (160-235)||(51871784-51871858)
chr1 (160-206)||(9919309-9919354)
chr1 (160-235)||(11453854-11453930)
chr1 (160-217)||(25728064-25728120)
chr1 (160-217)||(35584726-35584782)
chr1 (160-217)||(50166204-50166260)
chr1 (160-217)||(51868750-51868806)
chr1 (175-235)||(3871344-3871403)
chr1 (160-196)||(5324682-5324718)
chr1 (160-196)||(30818470-30818506)
[»] chr5 (21 HSPs)
chr5 (160-246)||(15570828-15570914)
chr5 (160-206)||(19259928-19259974)
chr5 (175-235)||(30298142-30298201)
chr5 (160-235)||(21060368-21060442)
chr5 (160-217)||(20257799-20257855)
chr5 (160-235)||(2057924-2057999)
chr5 (163-235)||(7613144-7613214)
chr5 (160-235)||(11767726-11767802)
chr5 (162-217)||(27266965-27267019)
chr5 (162-217)||(42579801-42579855)
chr5 (160-217)||(7241701-7241757)
chr5 (160-217)||(7246877-7246933)
chr5 (160-217)||(10649372-10649428)
chr5 (162-235)||(16981211-16981283)
chr5 (160-217)||(18677571-18677627)
chr5 (160-217)||(26578168-26578224)
chr5 (175-231)||(28097086-28097142)
chr5 (160-217)||(30371643-30371699)
chr5 (163-220)||(34881631-34881687)
chr5 (175-235)||(27751860-27751919)
chr5 (163-235)||(42886401-42886471)
[»] scaffold0311 (1 HSPs)
scaffold0311 (160-235)||(8636-8710)
[»] chr2 (22 HSPs)
chr2 (160-235)||(4192759-4192833)
chr2 (162-235)||(17319246-17319317)
chr2 (160-234)||(26025497-26025570)
chr2 (160-229)||(3725101-3725169)
chr2 (160-217)||(6173552-6173608)
chr2 (160-217)||(20047187-20047243)
chr2 (160-229)||(31581812-31581880)
chr2 (163-235)||(22421659-22421730)
chr2 (159-235)||(40626114-40626189)
chr2 (160-235)||(7015797-7015871)
chr2 (162-244)||(8308097-8308176)
chr2 (160-235)||(34598908-34598982)
chr2 (163-217)||(41712870-41712923)
chr2 (178-235)||(8971713-8971769)
chr2 (160-217)||(27249256-27249312)
chr2 (160-217)||(30420597-30420653)
chr2 (160-217)||(32680687-32680743)
chr2 (175-235)||(3270315-3270374)
chr2 (162-206)||(18694970-18695013)
chr2 (175-235)||(32913177-32913236)
chr2 (180-232)||(36323799-36323850)
chr2 (175-235)||(40660018-40660077)
[»] scaffold0146 (1 HSPs)
scaffold0146 (164-217)||(16427-16479)
[»] scaffold0014 (1 HSPs)
scaffold0014 (160-235)||(201458-201532)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 46818746 - 46818630
Alignment:
Q  1 caagaatagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46818746 caagaatagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattata 46818647  T
Q  101 atattatggtgtacaag 117  Q
    |||  ||||||||||||    
T  46818646 ataacatggtgtacaag 46818630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 46818601 - 46818500
Alignment:
Q  136 gttgaaagaaacatggtgtacaagtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46818601 gttgaaagaaacatggtgtacaagtctttttctctctcgctcaatctaaataagtgatttttcacataaattttggttttttcttcatgatttcgtcatc 46818502  T
Q  236 cg 237  Q
    ||    
T  46818501 cg 46818500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 31235953 - 31235878
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||    
T  31235953 tctttttctctctatttcaatctaaataagtgatttttcacatagatctaggttttctctacgtgatttcgtcatc 31235878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 6001937 - 6002012
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||| ||  || ||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||    
T  6001937 tctttttctccctattttaatctaaataagtgatttttcacatagatttaggttttctctacgtgatttcgtcatc 6002012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 36143782 - 36143853
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtc 232  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||| | |||||||||||| ||||||||||    
T  36143782 tctttttctctctaattcaatctaaataagtg-tttttcacgtagatctaggttttttcttcgtgatttcgtc 36143853  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 35667390 - 35667318
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  35667390 tttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 35667318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 20116499 - 20116572
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||| |||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| ||||    
T  20116499 tctttttctatctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcat 20116572  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 23425532 - 23425459
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||| |  ||||||||||||||||||||||| |||||||| | |||||||||||  ||||||| ||||    
T  23425532 tctttttctctatatttcaatctaaataagtgattttt-acatagatctaggttttttctttgtgatttcatcat 23425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 1485417 - 1485343
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | | |||||||||  ||||||| |||||    
T  1485417 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctagattttttctttgtgatttcatcatc 1485343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 43369908 - 43369855
Alignment:
Q  178 aatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtc 232  Q
    ||||||||||||||||||| ||||||||| |  ||||||||||| ||||||||||    
T  43369908 aatctaaataagtgatttt-cacatagatataagttttttcttcgtgatttcgtc 43369855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 2843388 - 2843332
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  2843388 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 2843332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 3860868 - 3860935
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    ||||||||||| |  |||||| ||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  3860868 tctttttctctttgtttcaatataaataagtga-ttttcacatagatcttgg-tttttcttcgtgatttc 3860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 32522081 - 32522013
Alignment:
Q  166 tctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||  |||||| ||||||||||||||| |||||||||||  ||||||||||| | |||||| ||||    
T  32522081 tctctctatttcaatttaaataagtgatttt-cacatagatttatgttttttcttcgttatttcgccatc 32522013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 32684604 - 32684656
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttt 216  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||    
T  32684604 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttt 32684656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 35496336 - 35496280
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||| | ||||||||    
T  35496336 tctttttctctctatttcaatctaattaagtga-ttttcacatagatctaggtttttt 35496280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 42067206 - 42067147
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||    
T  42067206 ttcaatctaaataagtga-ttttcacatagatatagattttttctttctgatttcatcatc 42067147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 48207833 - 48207892
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| |  ||||||||||  ||||||| |||||    
T  48207833 ttcaatctaaataagtga-ttttcacatagatctatgttttttctttgtgatttcatcatc 48207892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 35965136 - 35965050
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||| | |||||||| ||| |||||||||||||||  |||||||    
T  35965136 tctttttctctctatttcaatctgaataagtgatttttcacatagatctaggtttttttttcgtgatttcgtcatccgagtgtggtg 35965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 18139071 - 18139001
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    ||||||||||  ||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||    
T  18139071 ttttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttcttaatgatttcgtca 18139001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 49126284 - 49126214
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    ||||||||||  ||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||    
T  49126284 ttttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttcttaatgatttcgtca 49126214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 21090081 - 21090155
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  21090081 tctttttctctctatttcaatataaataagtgatttt-cacatagatttaggttttttcttcgtgatttcatcatc 21090155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 51317914 - 51317988
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  51317914 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 51317988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 38706871 - 38706815
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  38706871 tctttttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 38706815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 12265398 - 12265458
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||||||||||||||||| | |||||| ||| | |||||| ||||||    
T  12265398 ttcaatctaaataagtgatttttcacatagatctaggttttctctacgtgattttgtcatc 12265458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 34024597 - 34024523
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||| | ||||||||||||| | |||||||||||  ||||||| |||||    
T  34024597 tctttttctctctatttcaatctaaataagtta-ttttcacatagatctaggttttttctttttgatttcatcatc 34024523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 35261137 - 35261187
Alignment:
Q  177 caatctaaataagtgatttttcacatagattttggttttttcttcatgattt 228  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  35261137 caatctaaataagtgatttt-cacatagatttaggttttttcttcgtgattt 35261187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 2115749 - 2115693
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  2115749 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttaggtttttt 2115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 2624441 - 2624500
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcgtcat 234  Q
    |||||||||||||||||| ||||||||||||| | || |||||||||| ||||||||||||    
T  2624441 ttcaatctaaataagtga-ttttcacatagatctaggtttttttcttcgtgatttcgtcat 2624500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 1008223 - 1008289
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatt 227  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||| | |||||||||| |||||    
T  1008223 tctttttctctctattttaatctaaataagtga-ttttcacataaatttagtttttttcttcgtgatt 1008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 8009520 - 8009447
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| |||||||||||| | | ||||||||||  ||||||| |||||    
T  8009520 tctttttctctctatttcaatctaaataagtga-ttttcacataga-tctagttttttctttgtgatttcatcatc 8009447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 10359707 - 10359633
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||| |||||||||||||| |||| ||||| || | |||||||||||| ||||||| |||||    
T  10359707 tctttttctctctatttcgatctaaataagtga-ttttaacatatatctaggttttttcttcgtgatttcatcatc 10359633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 10389914 - 10389840
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||| |  ||||||| |||||    
T  10389914 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggttttttccttttgatttcatcatc 10389840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 31381832 - 31381758
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| |  ||||||||||  ||||||| |||||    
T  31381832 tctttttctctctttttcaatttaaataagtga-ttttcacatagatctaagttttttctttgtgatttcatcatc 31381758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 25273811 - 25273864
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25273811 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25273864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 43154179 - 43154126
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  43154179 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 43154126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9529039 - 9528983
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| |||||||||||||||  |||||||    
T  9529039 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttatgtttttt 9528983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 56194527 - 56194583
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  56194527 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 56194583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 14183731 - 14183767
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  14183731 tctttttctctctatttcaatctaaataagtgatttt 14183767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 23100617 - 23100673
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtga-tttttcacatagattttggtttttt 217  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||  |||||||    
T  23100617 tttttctctctaattcaatctaaataagtgatttttttacatagatttatgtttttt 23100673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 46991287 - 46991216
Alignment:
Q  164 tttctctctcgttcaatctaaataagtgatttttcacatagattttg-gttttttcttcatgatttcgtcatc 235  Q
    |||||||||  |||||||||||| ||||| ||||||||||||| | |  ||||||||||||||||| ||||||    
T  46991287 tttctctctatttcaatctaaatgagtga-ttttcacatagatctagatttttttcttcatgattttgtcatc 46991216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 46178490 - 46178576
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||| ||||  |||||||    
T  46178490 tctttttctctctaattcaatctaaataagtgctttttcacatagatctaggttttttcttcgtgatttcgtcttccgagtgtggtg 46178576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 37169145 - 37169217
Alignment:
Q  161 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| | | |||||||||| |||||||||||    
T  37169145 ctttttctctctaattcaatataaataagtgatttttcacatagatctagattttttcttcttgatttcgtca 37169217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 38440738 - 38440670
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  38440738 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 38440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 22802935 - 22802990
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt 215  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||| | ||||||    
T  22802935 tctttttctctctatttcaatctaaataagtgatttttcacgtagatctaggtttt 22802990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47980809 - 47980750
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  47980809 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 47980750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47990096 - 47990037
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  47990096 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 47990037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47999383 - 47999324
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  47999383 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 47999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 48008670 - 48008611
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  48008670 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 48008611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 4172480 - 4172536
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  4172480 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 4172536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 17237720 - 17237772
Alignment:
Q  164 tttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  17237720 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 17237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 25631688 - 25631632
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25631688 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25631632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 39917555 - 39917483
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||| |  ||||||| |||||    
T  39917555 tttttctctctaattcaatctaaataagtga-ttttcacatagatctaggttttttccttgtgatttcatcatc 39917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 46934556 - 46934630
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||| |||||||  |||||||||||||||||| |||||||||||||   |||||||||||  ||||||| |||||    
T  46934556 tctttctctctctatttcaatctaaataagtga-ttttcacatagatccaggttttttcttgttgatttcatcatc 46934630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 25162350 - 25162405
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  25162350 tctttttctctctatttcaatctaaataagtga--tttcacatagatctaggtttttt 25162405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 3850616 - 3850560
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  3850616 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 3850560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 29503378 - 29503450
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||| |  |||||||||||||| ||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  29503378 tttttctctatatttcaatctaaataattgatttt-cacatagatctaggttttttctttgtgatttcatcatc 29503450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 35499362 - 35499306
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  35499362 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 35499306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 36906035 - 36906091
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||| ||||||||||| ||||||||||||||| ||||||||    
T  36906035 tctttttctctttatttcaatataaataagtga-ttttcacatagatttaggtttttt 36906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 2342405 - 2342441
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2342405 tctttttctctctatttcaatctaaataagtgatttt 2342441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 4178478 - 4178514
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  4178478 tctttttctctctatttcaatctaaataagtgatttt 4178514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 16235323 - 16235351
Alignment:
Q  175 ttcaatctaaataagtgatttttcacata 203  Q
    |||||||||||||||||||||||||||||    
T  16235323 ttcaatctaaataagtgatttttcacata 16235351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 15597312 - 15597251
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccg 237  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  15597312 ttcaatctaaataagtgatttt-cacatagatctaggttttttcttcatgatttcgtcatccg 15597251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 33342375 - 33342433
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  33342375 ttcaatctaaataagtgatttttcacatagatctaggttttttcttcgtgatttcgtca 33342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 16794216 - 16794292
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccg 237  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || | || ||||||||| ||||||| |||||||    
T  16794216 tctttttctctctaattcaatctaaataagtgatttttcacataaatctagg-tttttcttcgtgatttcatcatccg 16794292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 35580381 - 35580455
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||| | |||||||||||| ||||||| |||||    
T  35580381 tctttttctctctatttcaatttaaataagtgatttt-cacatagatctaggttttttcttcgtgatttcatcatc 35580455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 28239756 - 28239830
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| | |||||| ||| |  |||||||||||    
T  28239756 tctttttctctctatttcaatctaaataagtgttttttcacatagatctaggttttctctacgcgatttcgtcat 28239830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 11725604 - 11725679
Alignment:
Q  159 gtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||| |  ||||||||||||||||| |||||||||||||| | |||||||||||  ||||||| |||||    
T  11725604 gtctttttctctttatttcaatctaaataagtg-tttttcacatagatctaggttttttctttttgatttcatcatc 11725679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 43192503 - 43192432
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||||||||||||| ||||| |||||||| | |||||||||||| ||||||| |||||    
T  43192503 ttttctctctatttcaatctaaataagtggttttt-acatagatctaggttttttcttcgtgatttcatcatc 43192432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 11196828 - 11196887
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  11196828 ttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 11196887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 9498748 - 9498707
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  9498748 ttcaatctaaataagtga-ttttcacatagatttaggtttttt 9498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 39153291 - 39153217
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggt----tttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||| ||||||||||||||| ||||||||||| |||    ||||||||| |||||||||||||||  |||||||    
T  39153291 ttcaatttaaataagtgatttt-cacatagatttaggtattttttttcttcgtgatttcgtcatccgagtgtggtg 39153217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9619519 - 9619463
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| | ||||||    
T  9619519 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttagatttttt 9619463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 33298794 - 33298854
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatcc 236  Q
    |||||||||||||||||| ||||||||||||| | ||||||  |||  ||||||||||||||    
T  33298794 ttcaatctaaataagtga-ttttcacatagatctaggttttacctttgtgatttcgtcatcc 33298854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 17949171 - 17949226
Alignment:
Q  161 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||||  ||||||||||||||| || ||||||||||||| ||| ||||||    
T  17949171 ctttttctctctatttcaatctaaataagcga-ttttcacatagatcttgatttttt 17949226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 19876150 - 19876209
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| |||||||||||||   |||||||||||  ||||||| |||||    
T  19876150 ttcaatctaaataagtga-ttttcacatagatcaaggttttttctttgtgatttcatcatc 19876209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 34489164 - 34489252
Alignment:
Q  160 tctttttctctctcgttcaatcta--aataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  |||||| ||  ||||||||||||||||||||||| | |||||||||||| ||||||| |||||||  |||||||    
T  34489164 tctttttctctctaattcaatatataaataagtgatttttcacatagatctaggttttttcttcgtgatttcatcatccgagtgtggtg 34489252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 33543780 - 33543706
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||  | ||||||||| |||||||||||||    
T  33543780 tctttttctctatatttcaatctaaataagtaatttttcacatagatttaag-tttttcttcgtgatttcgtcatc 33543706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 33740739 - 33740683
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  33740739 tctttttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 33740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 23947475 - 23947404
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  23947475 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 23947404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 33109750 - 33109824
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  33109750 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcatc 33109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 8196568 - 8196512
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  8196568 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 8196512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12165772 - 12165816
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttctt 220  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||    
T  12165772 ttcaatctaaataagtgatttt-cacatagatttaggttttttctt 12165816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 8028279 - 8028204
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |  | ||||||||| |||||||| |||||    
T  8028279 tctttttctctctgtttcaatctaaataagtga-ttttcacatagatctaagtttttttctttatgatttcatcatc 8028204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 16419074 - 16419149
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| |||| |||||||||  ||||||| |||||    
T  16419074 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctttgtttttttctttgtgatttcatcatc 16419149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 4468475 - 4468548
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    |||| ||||||||  |||||||||||||||||| |||||| |||||| | |||||||||||  ||||||| ||||    
T  4468475 tcttgttctctctatttcaatctaaataagtga-ttttcatatagatctaggttttttctttgtgatttcatcat 4468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 12652856 - 12652901
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  12652856 tctttttctctctatttcaatctaaataagtga-ttttcacatagat 12652901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 8266551 - 8266588
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgattttt 197  Q
    |||||||||||||  |||||||||||||||||||||||    
T  8266551 tctttttctctctacttcaatctaaataagtgattttt 8266588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 8496881 - 8496937
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  8496881 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 8496937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 17237445 - 17237377
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    ||||||||||| |  |||||||||||||||| | ||||||||||||| | |||||||||||  |||||||    
T  17237445 tctttttctctatatttcaatctaaataagtta-ttttcacatagatctaggttttttctttgtgatttc 17237377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 25064151 - 25064207
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25064151 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25064207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 25337501 - 25337572
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggtttttt-cttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||| ||||||| |||||| || | |||||||| |||| |||||||||||||||  |||||||    
T  25337501 ttcaatctaaataaatgatttt-cacataaatctaggtttttttcttcgtgatttcgtcatccgagtgtggtg 25337572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 18569471 - 18569397
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt-ttcttcatgatttcgtcat 234  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||| |||||| ||||||||||||    
T  18569471 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttcttcttcgtgatttcgtcat 18569397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 34519054 - 34519127
Alignment:
Q  161 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  34519054 ctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 34519127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 39987310 - 39987395
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||| | | ||||||||||| |||||||  ||||||  |||||||    
T  39987310 tctttttctctctgattcaatctaaataagtgatttttcatataga-tctagttttttcttcgtgatttcaccatccgagtgtggtg 39987395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 14545440 - 14545514
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  14545440 tctttttctctatatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcatc 14545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 38520694 - 38520620
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||| |||||||||||||| ||||||||||||| |  ||||||||||| ||||||| |||||    
T  38520694 tctttttctctctatttcgatctaaataagtga-ttttcacatagatctatgttttttcttcgtgatttcatcatc 38520620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 19716058 - 19716002
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  19716058 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttaggtttttt 19716002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 28035059 - 28035115
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  28035059 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 28035115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 25406445 - 25406370
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | || |||||||||  |||||||||||||    
T  25406445 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttttctttgtgatttcgtcatc 25406370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36882892 - 36882960
Alignment:
Q  7 tagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaag 75  Q
    |||||||| |||||||||||||| |||   |||||| |||||||  ||| |||||||||||||||||||    
T  36882892 tagaaaaagagcaagaaatgctaatttgagtgatgggcattggaagattaaggttaaggatcctagaag 36882960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 27872659 - 27872725
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatt 227  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||| |  ||||||||||| |||||    
T  27872659 tctttttcgctctatttcaatctaaataagtga-ttttcacatagatctaagttttttcttcgtgatt 27872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 51871784 - 51871858
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | | |||||||||  ||||||| |||||    
T  51871784 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctagcttttttctttgtgatttcatcatc 51871858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 9919309 - 9919354
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||    
T  9919309 tctttttctctctatttcaatctaaataagtgattttt-acatagat 9919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 11453854 - 11453930
Alignment:
Q  160 tctttttctctctcg--ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||   ||||||||||||||||| |||| ||||||||| | |||||||||||  ||||||| |||||    
T  11453854 tctttttctctctctatttcaatctaaataagtggtttt-cacatagatctaggttttttctttgtgatttcatcatc 11453930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 25728120 - 25728064
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25728120 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25728064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 35584782 - 35584726
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  35584782 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 35584726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 50166260 - 50166204
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||| |||  ||||||||||||||||||  |||||||||||||| ||||||||    
T  50166260 tctttttctatctatttcaatctaaataagtga-atttcacatagatttaggtttttt 50166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 51868806 - 51868750
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  51868806 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 51868750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 3871344 - 3871403
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| |  ||||||||||  ||||||| |||||    
T  3871344 ttcaatctaaataagtga-ttttcacatagatctaagttttttctttgtgatttcatcatc 3871403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 5324718 - 5324682
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5324718 tctttttctctctatttcaatctaaataagtgatttt 5324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 30818506 - 30818470
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  30818506 tctttttctctctatttcaatctaaataagtgatttt 30818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 15570828 - 15570914
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    ||||||||||| |  |||||||||||||  ||||||||||||||||| | |||||||||||  ||||||||||| |||  |||||||    
T  15570828 tctttttctctataattcaatctaaatatttgatttttcacatagatgtaggttttttctttgtgatttcgtcacccgagtgtggtg 15570914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 19259974 - 19259928
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  19259974 tctttttctctctatttcaatctaaataagtgatttttcacatagat 19259928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 30298142 - 30298201
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||| |||||||| |||||    
T  30298142 ttcaatctaaataagtgatttt-cacatagatctaggttttttctttatgatttcatcatc 30298201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 21060442 - 21060368
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||| |||| || |||||    
T  21060442 tctttttctctatatttcaatctaaataagtga-ttttcacatagatgtaggttttttcttcgtgatgtcatcatc 21060368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 20257855 - 20257799
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  20257855 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 20257799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 2057999 - 2057924
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | || ||||||||| |||||||| |||||    
T  2057999 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttttctttatgatttcatcatc 2057924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 7613214 - 7613144
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||||||||||||| ||||||| |||||| | || |||||||||||||||| ||||||    
T  7613214 ttttctctctgtttcaatctaaataagtg-tttttcatatagatctagg-tttttcttcatgattttgtcatc 7613144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 11767726 - 11767802
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||||||||||| ||||| | || |||||||||| |||| ||| ||||    
T  11767726 tctttttctctatatttcaatctaaataagtgatttttcacgtagatatatgtttttttcttcgtgatgtcgccatc 11767802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 27267019 - 27266965
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  27267019 tttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 27266965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 42579801 - 42579855
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||| |||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  42579801 tttttctttctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 42579855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7241701 - 7241757
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  7241701 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 7241757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7246877 - 7246933
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  7246877 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 7246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 10649372 - 10649428
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  10649372 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 10649428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 16981211 - 16981283
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||  |||||||||||||||||| ||| |||||| || | |||||||||||  ||||||| |||||    
T  16981211 tttttctctctatttcaatctaaataagtga-tttacacatatatctaggttttttctttgtgatttcatcatc 16981283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18677627 - 18677571
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  || ||||||||||||||| ||||||||||||| | ||||||||    
T  18677627 tctttttctctctattttaatctaaataagtga-ttttcacatagatctaggtttttt 18677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 26578168 - 26578224
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  26578168 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 26578224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 28097086 - 28097142
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggtt-ttttcttcatgatttcgt 231  Q
    |||||| ||||||||||| |||||||||| |||| |||| ||||||||||||||||||    
T  28097086 ttcaatataaataagtga-ttttcacataaatttaggttattttcttcatgatttcgt 28097142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 30371643 - 30371699
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  30371643 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 30371699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 34881631 - 34881687
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttctt 220  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | | |||||||||    
T  34881631 ttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttctt 34881687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 27751860 - 27751919
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  27751860 ttcaatataaataagtgatttt-cacatagatctaggttttttctttgtgatttcatcatc 27751919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 42886401 - 42886471
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||| ||||||||| |||| ||||||||||| || ||||||||| ||||||| |||||    
T  42886401 ttttctctctatttcaatcaaaataagtgctttt-cacatagatttagg-tttttcttcgtgatttcatcatc 42886471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 8636 - 8710
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||| |||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  8636 tctttttatctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcatc 8710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 4192759 - 4192833
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| |||||||||| |||| |||||||||||  ||||||| |||||    
T  4192759 tctttttctctatatttcaatctaaataagtga-ttttcacatatatttaggttttttctttgtgatttcatcatc 4192833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 17319246 - 17319317
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||| |||  |||||||||||||| |   ||||||||||||| | ||||||||||||||||||||||||||    
T  17319246 tttttctatctatttcaatctaaataacta--ttttcacatagatctaggttttttcttcatgatttcgtcatc 17319317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 26025570 - 26025497
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    |||||||||||||  |||||||||||||||||  ||||||||||||| | |||||||||||  ||||||| ||||    
T  26025570 tctttttctctctatttcaatctaaataagtg-gttttcacatagatctaggttttttctttgtgatttcatcat 26025497  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 3725101 - 3725169
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| ||| |||||||||  |||||||    
T  3725101 tctttttctctctatttcaatataaataagtga-ttttcacatagatcttgattttttctttgtgatttc 3725169  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 6173552 - 6173608
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  6173552 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 6173608  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 20047243 - 20047187
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| |||| |||||||||| ||||||||    
T  20047243 tctttttctctctttttcaatctaaataagtgactttt-acatagatttaggtttttt 20047187  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 31581880 - 31581812
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | | |||||||||  |||||||    
T  31581880 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttctttttgatttc 31581812  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 22421659 - 22421730
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||||||||||||||  |||||||||||| | |||||||||||  ||||||| |||||    
T  22421659 ttttctctctatttcaatctaaataagtga-ctttcacatagatctaggttttttctttgtgatttcatcatc 22421730  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 40626189 - 40626114
Alignment:
Q  159 gtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||| |  ||||||||||  ||||||| |||||    
T  40626189 gtctttttctctctatttcaatctaaataaggga-ttttcacatagatctacgttttttctttgtgatttcatcatc 40626114  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 7015871 - 7015797
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||| ||||||| ||||||||||| ||||||||| |  ||||||| |||||    
T  7015871 tctttttctctttatttcaatctaaataattgatttt-cacatagatttaggttttttccttgtgatttcatcatc 7015797  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 8308097 - 8308176
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtgg 244  Q
    ||||| |||||  ||||||||||||  |||||||| ||||||||| | |||||||||||| ||||||||||||| | ||||||    
T  8308097 tttttttctctaattcaatctaaat--gtgatttt-cacatagatctaggttttttcttcgtgatttcgtcatctgactgtgg 8308176  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 34598908 - 34598982
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | | |||||| ||  ||||||| |||||    
T  34598908 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttttttgtgatttcatcatc 34598982  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 41712923 - 41712870
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||| ||||||||    
T  41712923 ttttctctctattttaatctaaataagtga-ttttcacatagatttaggtttttt 41712870  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 8971769 - 8971713
Alignment:
Q  178 aatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  8971769 aatctaaataagtgatttt-cacatagatctaggttttttctttgtgatttcatcatc 8971713  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 27249312 - 27249256
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  27249312 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 27249256  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 30420597 - 30420653
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  30420597 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 30420653  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 32680743 - 32680687
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  32680743 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 32680687  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 3270374 - 3270315
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | |||||||| ||  ||||||| |||||    
T  3270374 ttcaatctaaataagtga-ttttcacatagatctaggttttttttttgtgatttcatcatc 3270315  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 18694970 - 18695013
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  18694970 tttttctctctatttcaatctaaataagtgattttt-acatagat 18695013  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 32913177 - 32913236
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  32913177 ttcaatttaaataagtgatttt-cacatagatctaggttttttctttgtgatttcatcatc 32913236  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 36323799 - 36323850
Alignment:
Q  180 tctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtc 232  Q
    ||||||||||||||||| ||||||||||| ||||||||||   ||||||||||    
T  36323799 tctaaataagtgatttt-cacatagatttaggttttttctctgtgatttcgtc 36323850  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 40660077 - 40660018
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||    
T  40660077 ttcaatctaaataagtga-ttttcacatagatctagattttttctttgtgatttcatcatc 40660018  T

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Target: scaffold0146 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 16479 - 16427
Alignment:
Q  164 tttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  16479 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 16427  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 201532 - 201458
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||    
T  201532 tctttttctctatatttcaatctaaataagtga-ttttcacatagatctagattttttctttgtgatttcatcatc 201458  T

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