View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_150 (Length: 253)
Name: NF1376_low_150
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_150 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6297061 - 6297296
Alignment:
| Q |
1 |
atgtaaattcctgttgcaatacgctttgaacttgtatgtgtgcgttattgttttagtat---ttgattgactggcagcttgtacttgcaggtggcaatag |
97 |
Q |
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| T |
6297061 |
atgtaaattcctgttgcaataagctttgaacttgtatgtgtgtgttattgttttagtatggtttgattgactggcagcttgtacttgcaggtggcaatag |
6297160 |
T |
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| Q |
98 |
attcagccacacctgttgacgatgctaggcccagtggaaattttatgatgaacaatagtatggaatcttttgggggatatggtggtccggtgcgaagtta |
197 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6297161 |
attcagccacacctgttgacgatgctaggcccagcggaaattttatgatgaacaatagtatggaatcttttgggggatatggcggtccggtgcgaagtta |
6297260 |
T |
|
| Q |
198 |
tgggaggatgtatggcggtttagactatgatgatgt |
233 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
6297261 |
tgggaggatgtatggtggtttagactatgatgatgt |
6297296 |
T |
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