View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_152 (Length: 251)
Name: NF1376_low_152
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_152 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1338734 - 1338497
Alignment:
| Q |
1 |
cacgtggttagaaaatttattctgcttccttaatctttaacctgaactggtgttgaatcttatgttttctactccagagatggtaaactattctgctgac |
100 |
Q |
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|||||||||||||||||| | ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||| |
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| T |
1338734 |
cacgtggttagaaaatttgtcttgcttccttcatcattaacctgaactggttttgaatcttatgttttctactccagagatggtgaattatttggctgac |
1338635 |
T |
|
| Q |
101 |
tctcaaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaagaaggttc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| | ||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
1338634 |
tctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaaggagaaggttc |
1338535 |
T |
|
| Q |
201 |
catatctttaattgatattatgctctgttattttatct |
238 |
Q |
| |
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| T |
1338534 |
cctatctttaattgatattatgtactgttattttatct |
1338497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 9390879 - 9390652
Alignment:
| Q |
5 |
tggttagaaaatttattctgcttccttaatctttaacctgaactggtgttgaatcttatgttttctactccagagatggtaaactattctgctgactctc |
104 |
Q |
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|||||||||||| | | ||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
9390879 |
tggttagaaaatctgtcttgcttccttcatcattaagctgaactggtgttgaatcttgtgttttctactccagagatggtgaattattctgctgactctc |
9390780 |
T |
|
| Q |
105 |
aaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaagaaggttccata |
204 |
Q |
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|||||||||||||||||||||| |||||||| | |||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
9390779 |
aaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtatcata |
9390680 |
T |
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| Q |
205 |
tctttaattgatattatgctctgttatt |
232 |
Q |
| |
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|||| ||||||||||||| |||||||| |
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| T |
9390679 |
tcttgaattgatattatgtactgttatt |
9390652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 31940546 - 31940329
Alignment:
| Q |
5 |
tggttagaaaatttattctgcttccttaatctttaacctgaactggtgttgaatcttatgttttctactccagagatggtaaactattctgctgactctc |
104 |
Q |
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|||||||||||| | | ||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| || |
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| T |
31940546 |
tggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctactccagagatggcgaattattctgctgactatc |
31940447 |
T |
|
| Q |
105 |
aaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaagaaggttccata |
204 |
Q |
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| |||||||||||||||||||| |||||||| | ||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| || || |
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| T |
31940446 |
atagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgta |
31940347 |
T |
|
| Q |
205 |
tctttaattgatattatg |
222 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
31940346 |
tcttgaattgatattatg |
31940329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 5640527 - 5640384
Alignment:
| Q |
95 |
gctgactctcaaagtgcaccaagtggtatgctttatgatcatatgcctttgaacttaaatatcaatgactatgagagagtttgcctcattccaaagaaga |
194 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |||||||| | ||| | ||||||| | |||||||||||||||||||||||||||| ||||||| |
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| T |
5640527 |
gctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaaga |
5640428 |
T |
|
| Q |
195 |
aggttccatatctttaattgatattatgctctgttattttatct |
238 |
Q |
| |
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||||||| ||||| ||||||||||||| ||||||||||||||| |
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| T |
5640427 |
aggttcctgatcttgaattgatattatgttctgttattttatct |
5640384 |
T |
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