View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_159 (Length: 251)
Name: NF1376_low_159
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_159 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40553103 - 40553324
Alignment:
| Q |
1 |
ttttaaattgtggttgtgccatatattgagaagaagaataatgatcaaatgtggttgatgcggactcaatagcaattagagtcgctgagacatcaaaaac |
100 |
Q |
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| T |
40553103 |
ttttaaattgtggttgtgccatatattgagaagaagaataatgatcaaatgtggttgatgcggactcaatagcaattaaagtcgctgagacatcaaaaac |
40553202 |
T |
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| Q |
101 |
cttgatattgcaatatgaattgttgtcgcagaccttttctnnnnnnnnnnnnnnnnnngctacattttattttgtacttcacccttgacaggtggttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40553203 |
cttgatattgcaatatgaattgttgtcgcagaccttttctaaaaataaaaaataaaaagctacattttaatttgtacttcacccttgacaggtggttaat |
40553302 |
T |
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| Q |
201 |
tcagatccaaatacatatgttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
40553303 |
tcagatccaaatacatatgttt |
40553324 |
T |
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