View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_160 (Length: 251)
Name: NF1376_low_160
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_160 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 10972252 - 10972161
Alignment:
| Q |
78 |
aatgaaagagaaacatgctaccttagttgaagtttatggactgtaacaacaacacgcgcaatgagggcaaaagaaataaccttaatttatgag |
170 |
Q |
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| T |
10972252 |
aatgaaagagaaacatgctaccttagttga-gtttatggaccgtaacaacaacacgcgcaatgagggcaaaagaaataaccttagtttatgag |
10972161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 10973189 - 10973126
Alignment:
| Q |
7 |
tagataattctaaaccattaatagcaatctaatgctagaggattggagattataaatacatcta |
70 |
Q |
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| T |
10973189 |
tagatacttctaaaccattaatagcaatctaatgctagaggattggagattataaatacatcta |
10973126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 10972137 - 10972088
Alignment:
| Q |
202 |
gtttcatagacacaattatcattgaaaatccacacataagtggagagtcc |
251 |
Q |
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| T |
10972137 |
gtttcataaacacaattttcattgaaaatccacacataagtgaagagtcc |
10972088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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