View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_162 (Length: 249)
Name: NF1376_low_162
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_162 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 13550975 - 13551054
Alignment:
| Q |
141 |
caacatatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttc |
220 |
Q |
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| T |
13550975 |
caacatatagtttgaagttctctcaaaaaacatatagtttaaagtaatgacgtaaatcactaaccatttaccacagtttc |
13551054 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13550839 - 13550897
Alignment:
| Q |
1 |
caaagcatgcatgttatgctctacttatatgataatcgtgtgtgttgttatgtctaacc |
59 |
Q |
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| T |
13550839 |
caaagcatgcatgttatgctctacttatatgataatcgtgtgtgttgttatgtctaacc |
13550897 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 27273705 - 27273780
Alignment:
| Q |
145 |
atatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttc |
220 |
Q |
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| T |
27273705 |
atatagtttaaagttctctcaaaaaagatacagtttgaagtaatgacgtaaatcactaaccatttaccacagtttc |
27273780 |
T |
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Target: scaffold0061 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 608 - 687
Alignment:
| Q |
141 |
caacatatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttc |
220 |
Q |
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||||||||| ||| |||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||| ||||| |
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| T |
608 |
caacatataatttaaagttctctcaaaaaacatacagtttgaagtaaagacgtaaatcacaaaccatttaccactgtttc |
687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 6119 - 6198
Alignment:
| Q |
141 |
caacatatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttc |
220 |
Q |
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||||||||| ||| |||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||| ||||| |
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| T |
6119 |
caacatataatttaaagttctctcaaaaaacatacagtttgaagtaaagacgtaaatcacaaaccatttaccactgtttc |
6198 |
T |
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