View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_164 (Length: 245)
Name: NF1376_low_164
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_164 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 44000684 - 44000877
Alignment:
| Q |
28 |
cctaaaccctagtttttataacaacattcaccgttctgtttctctcgtactgttgctccatgccgctgcgtttctctacctccgctggaaccctatcatc |
127 |
Q |
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| T |
44000684 |
cctaaaccctagtttttataacaacattcatcgttctgtttctctcgtactgttgctccatgccactgcgtttctctacctccgctggaatcctatcatc |
44000783 |
T |
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| Q |
128 |
accttctctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagt |
222 |
Q |
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| T |
44000784 |
accttcgctacccattcttccgtctgaactcg-agaagaaattttgtgtaggttaccggtgaagatactcctgcaactccgatgcatctgcaagt |
44000877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 43991233 - 43991319
Alignment:
| Q |
136 |
tacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagt |
222 |
Q |
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| T |
43991233 |
tacccactcttccgtttgaacttgtggaagaaatcctgtgtagattaccggtgaagatactcatgcaactccaatgcatctgcaagt |
43991319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 43996812 - 43996899
Alignment:
| Q |
135 |
ctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagt |
222 |
Q |
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| T |
43996812 |
ctacctactcttcggtctgaacttgtggaagaaatattgtgcaggttaccggtgaagatacttctgcagctccgatgcatatgcaagt |
43996899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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