View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_166 (Length: 242)

Name: NF1376_low_166
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_166
NF1376_low_166
[»] chr2 (2 HSPs)
chr2 (14-235)||(24454417-24454637)
chr2 (114-217)||(23348996-23349100)
[»] chr8 (4 HSPs)
chr8 (130-235)||(5662583-5662688)
chr8 (114-148)||(24788119-24788153)
chr8 (109-217)||(27541575-27541683)
chr8 (114-217)||(31100888-31100992)
[»] chr3 (7 HSPs)
chr3 (120-235)||(47763913-47764028)
chr3 (114-217)||(24761914-24762018)
chr3 (114-217)||(37982350-37982454)
chr3 (114-217)||(17681768-17681871)
chr3 (114-148)||(2549938-2549972)
chr3 (112-145)||(29861913-29861946)
chr3 (114-217)||(53973302-53973406)
[»] chr6 (1 HSPs)
chr6 (114-217)||(3065699-3065802)
[»] chr5 (2 HSPs)
chr5 (114-221)||(7473501-7473609)
chr5 (114-217)||(9043803-9043907)
[»] scaffold0096 (1 HSPs)
scaffold0096 (114-217)||(27411-27514)
[»] chr4 (1 HSPs)
chr4 (116-145)||(10195656-10195685)
[»] chr7 (1 HSPs)
chr7 (114-217)||(43071398-43071502)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 24454417 - 24454637
Alignment:
Q  14 agtgtagtgcttcttgcactcatatccattaacaatatataaatttacctatgctgataaatnnnnnnnnnttgtataattccgtctctatcatcaatct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||  ||    
T  24454417 agtgtagtgcttcttgcactcatatccattaacaatatataaatttacctatgctgataaataaaaaaaa-ttgtataattccgcctctatcatcatact 24454515  T
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatc 24454615  T
Q  214 atttagcttgacattcatctca 235  Q
    |||| |||||||||||||||||    
T  24454616 atttggcttgacattcatctca 24454637  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 23349100 - 23348996
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||||||    
T  23349100 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 23349001  T
Q  213 cattt 217  Q
    |||||    
T  23349000 cattt 23348996  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 5662583 - 5662688
Alignment:
Q  130 tcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttagcttgacattc 229  Q
    |||||||||| ||||||||   | ||||||| | |||||||  ||||||||||| |||| |||||||| ||||| ||||||||||||| ||| | |||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 5662682  T
Q  230 atctca 235  Q
    ||||||    
T  5662683 atctca 5662688  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 24788153 - 24788119
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaa 148  Q
    |||||||||||||||||| ||||||||||||||||    
T  24788153 tcatacttatatctaatcttaattaacattgctaa 24788119  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 27541683 - 27541575
Alignment:
Q  109 aatcttcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatc 208  Q
    |||| |||||||||||||||||| |  |||||||||||||   | ||||||| | ||||||| |||   || ||| ||||||||||    ||||||||||    
T  27541683 aatcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatc 27541584  T
Q  209 tcatcattt 217  Q
    |||||||||    
T  27541583 tcatcattt 27541575  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 31100992 - 31100888
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||||| ||||||| |||  ||| ||| || ||||||||  | ||||| ||||||||    
T  31100992 tcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcat 31100893  T
Q  213 cattt 217  Q
    |||||    
T  31100892 cattt 31100888  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 47764028 - 47763913
Alignment:
Q  120 ttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttag 219  Q
    ||||||||||||||| ||||||||||||| | | ||||||| | |||| ||  | ||||||||| |||| |||||||| ||||||||||  ||||| | |    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctgg 47763929  T
Q  220 cttgacattcatctca 235  Q
    || | |||||||||||    
T  47763928 ctaggcattcatctca 47763913  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 24762018 - 24761914
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    ||||||||||||||||||||  |||||||||||||   | ||||||| | ||||||| |||  ||| ||| || |||||| |  ||||||||||||||||    
T  24762018 tcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcat 24761919  T
Q  213 cattt 217  Q
    |||||    
T  24761918 cattt 24761914  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 37982350 - 37982454
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  ||||||||||||||||    
T  37982350 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcat 37982449  T
Q  213 cattt 217  Q
    |||||    
T  37982450 cattt 37982454  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 17681768 - 17681871
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |  ||||||||| |||     ||||||| | ||||||| |||  ||| ||| |||||||||| || |||||||||||||||    
T  17681768 tcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcatc 17681867  T
Q  214 attt 217  Q
    ||||    
T  17681868 attt 17681871  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 2549938 - 2549972
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaa 148  Q
    |||||||||||||||||| ||||||||||||||||    
T  2549938 tcatacttatatctaatcttaattaacattgctaa 2549972  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 29861946 - 29861913
Alignment:
Q  112 cttcatacttatatctaatcctaattaacattgc 145  Q
    |||||||||||| |||||||||||||||||||||    
T  29861946 cttcatacttatttctaatcctaattaacattgc 29861913  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 53973406 - 53973302
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  53973406 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcat 53973307  T
Q  213 cattt 217  Q
    |||||    
T  53973306 cattt 53973302  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 3065699 - 3065802
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |  ||||||| |||||   | ||||||| | ||||||| |||  ||| ||| ||||||||||  |||||||||||||||||    
T  3065699 tcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctcatc 3065798  T
Q  214 attt 217  Q
    ||||    
T  3065799 attt 3065802  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 7473609 - 7473501
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  7473609 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 7473510  T
Q  213 catttagct 221  Q
    |||||||||    
T  7473509 catttagct 7473501  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 9043803 - 9043907
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||||||    
T  9043803 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 9043902  T
Q  213 cattt 217  Q
    |||||    
T  9043903 cattt 9043907  T

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Target: scaffold0096 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 27411 - 27514
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |  |||||||||||||     ||||||| | ||||||| |||  ||| ||| ||||||||||  | |||||||||||||||    
T  27411 tcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatc 27510  T
Q  214 attt 217  Q
    ||||    
T  27511 attt 27514  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 10195656 - 10195685
Alignment:
Q  116 atacttatatctaatcctaattaacattgc 145  Q
    ||||||||||||||||||||||||||||||    
T  10195656 atacttatatctaatcctaattaacattgc 10195685  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 43071502 - 43071398
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||||||    
T  43071502 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 43071403  T
Q  213 cattt 217  Q
    |||||    
T  43071402 cattt 43071398  T

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