View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_167 (Length: 242)
Name: NF1376_low_167
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_167 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 39142123 - 39142344
Alignment:
| Q |
22 |
gctatatctatagactagacgttttggccatttcttcannnnnnnnccttgaccagagtccttcctttacactttcctctttcactttcatttctaggtt |
121 |
Q |
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| T |
39142123 |
gctatatctatagactagacgttttggccatttcttcattttttttccttgaccagagtccttcctttacactttcctctttcactttcatttctaggtt |
39142222 |
T |
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| Q |
122 |
actctctctgtctctcannnnnnn-gttacgtttcattttcatcacctgcttcaaaaagaccactaccatcatcttcatcatatatattgttaatggtaa |
220 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142223 |
actctctctgtctctcattttttttgttacgtttcattttcatcacctgcttcaaaaagaccactaccatcatcttcatcatatatattgttaatggtaa |
39142322 |
T |
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| Q |
221 |
atgtttctttggaaacatgaaa |
242 |
Q |
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|||||||||||||||||||||| |
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| T |
39142323 |
atgtttctttggaaacatgaaa |
39142344 |
T |
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