View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_174 (Length: 229)
Name: NF1376_low_174
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_174 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 1507688 - 1507898
Alignment:
| Q |
1 |
aaaatatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1507688 |
aaaatatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatc |
1507787 |
T |
|
| Q |
101 |
ataacatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctt |
200 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1507788 |
ataacatgacaccattgtccaagggtgaactatctgaaatttaccgaaaaattggtgctagaaatatctctgaatcattatgcaaagaagaatcatcctt |
1507887 |
T |
|
| Q |
201 |
agtgaatgatg |
211 |
Q |
| |
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|||||||||| |
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| T |
1507888 |
ggtgaatgatg |
1507898 |
T |
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Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 3013356 - 3013565
Alignment:
| Q |
2 |
aaatatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatca |
101 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| | |
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| T |
3013356 |
aaatatttctggtagataaggaagatgtttttattcctgatagccttcatatgaagaagctttttgagaaggaaaaagtttttgtatggtatcctcagta |
3013455 |
T |
|
| Q |
102 |
taacatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctta |
201 |
Q |
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||||||||||| ||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3013456 |
taacatgacaccattgtccaagtctaaactatccaacatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcgtccttg |
3013555 |
T |
|
| Q |
202 |
gtgaatgatg |
211 |
Q |
| |
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|||||||||| |
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| T |
3013556 |
gtgaatgatg |
3013565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 2929426 - 2929219
Alignment:
| Q |
2 |
aaatatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatca |
101 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| || || |
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| T |
2929426 |
aaatatttctggtagataaaaaagatgcttttattcccgataatcttcatatgaagaagctttttgagagggagaaagtttttgtatggtatccccagca |
2929327 |
T |
|
| Q |
102 |
taacatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctta |
201 |
Q |
| |
|
|| ||||| | ||| ||||||| ||| || ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
2929326 |
tagcatgaaaacattttccaagtctgagctgtctgacatttacagaaaaattggtgttagaaatatctctgaatcactgtgcaaagaagaatcagcctcc |
2929227 |
T |
|
| Q |
202 |
gtgaatga |
209 |
Q |
| |
|
|||||||| |
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|
| T |
2929226 |
gtgaatga |
2929219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 2946067 - 2945858
Alignment:
| Q |
2 |
aaatatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatca |
101 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| | |
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|
| T |
2946067 |
aaatatttctggttgataaggaagatgtttttattcctgatagtcttcatatgaagaagctttttgagaaggaaaaagtttttgtatggtatcctcagta |
2945968 |
T |
|
| Q |
102 |
taacatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctta |
201 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2945967 |
taacatgacaccgttgtccaagtctaaactatcccgcatttacagaaaaattggtgctagaaatatctctgaatcactttgcaaagaagaatcatcctcg |
2945868 |
T |
|
| Q |
202 |
gtgaatgatg |
211 |
Q |
| |
|
|||||||||| |
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|
| T |
2945867 |
gtgaatgatg |
2945858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 37794796 - 37794600
Alignment:
| Q |
4 |
atatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatcata |
103 |
Q |
| |
|
||||||||| | || |||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||| |||||||| ||||||||||| || |
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| T |
37794796 |
atatttctgctggacaagaaagatgtttttatacctgataaccttcatctgaagaagctttttgagcaggagaagatttttgtgtggtatcctcagcagg |
37794697 |
T |
|
| Q |
104 |
acatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctt |
200 |
Q |
| |
|
|| | | | ||||| | | | ||| ||| || ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
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| T |
37794696 |
actttgggccttcgtccatttctaagttatatgacatctacagaaaaatcggtgctcgaaatatatctgaatcactatgcaaagaagaatcttcctt |
37794600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 2919792 - 2919723
Alignment:
| Q |
142 |
tacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatccttagtgaatgatg |
211 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| || |||||| ||| |||||| ||||| ||||||| |
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| T |
2919792 |
tacagaaacattggtgctcgaaatatctctgaatcgctgtgcaaaaaagtatcatctttagttaatgatg |
2919723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 2919903 - 2919836
Alignment:
| Q |
31 |
tttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctca |
98 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||| || ||||| ||||||||||| |
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|
| T |
2919903 |
tttattcctgataatcttcatctgaagaagctttttgagcaggagaagatatttgtgtggtatcctca |
2919836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 4917042 - 4917239
Alignment:
| Q |
4 |
atatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatcata |
103 |
Q |
| |
|
||||||||| | || ||| ||||||| || |||||||||||| | ||||||| |||||||||||||||||| | | ||||| ||||||||||| |||| |
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|
| T |
4917042 |
atatttctgcttgacaaggaagatgctttcattcctgataacctacatatgatgaagctttttgagagggaaattttgtttgtgtggtatcctcagcata |
4917141 |
T |
|
| Q |
104 |
acatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctta |
201 |
Q |
| |
|
||||| ||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||| | |||||||| |
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|
| T |
4917142 |
acatggcaccattgtccaagtctaaactatctgatatttacagaaaaattggtgctagaaatatctcctagttactatgcaaagaagcaacatcctta |
4917239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 28023809 - 28023613
Alignment:
| Q |
4 |
atatttctggtagataagaaagatgcatttattcctgataactttcatatgaagaagctttttgagagggagaaaatttttgtctggtatcctcatcata |
103 |
Q |
| |
|
||||||||| | || |||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||| |||||||| ||||||||||| || |
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|
| T |
28023809 |
atatttctgctggacaagaaagatgtttttatacctgataaccttcatctgaagaagctttttgagcaggagaagatttttgtgtggtatcctcagcagg |
28023710 |
T |
|
| Q |
104 |
acatgacacaattgtccaagtgtgaactatctgaaatttacagaaaaattggtgctagaaatatctctgaatcactatgcaaagaagaatcatcctt |
200 |
Q |
| |
|
|| | | | ||||| | | | ||| ||| || ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
28023709 |
actttgggccttcgtccatttctaagttatatgacatctacagaaaaatcggtgctcgaaatatatctgaatcactatgcaaagaagaatcttcctt |
28023613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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