View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_175 (Length: 228)
Name: NF1376_low_175
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_175 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 48068765 - 48068566
Alignment:
| Q |
19 |
cattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacattt |
118 |
Q |
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| T |
48068765 |
cattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacattt |
48068666 |
T |
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| Q |
119 |
attgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaacctatgcttct |
218 |
Q |
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| T |
48068665 |
attgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaacctatgtttct |
48068566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 48101362 - 48101163
Alignment:
| Q |
19 |
cattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacattt |
118 |
Q |
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| T |
48101362 |
cattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattc |
48101263 |
T |
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| Q |
119 |
attgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaacctatgcttct |
218 |
Q |
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| T |
48101262 |
attgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatgtttct |
48101163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 48064109 - 48063920
Alignment:
| Q |
19 |
cattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacattt |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||| ||||||||| ||||||||||| ||||| ||| |
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| T |
48064109 |
cattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattc |
48064010 |
T |
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| Q |
119 |
attgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaac |
208 |
Q |
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| T |
48064009 |
attgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 48107777 - 48107589
Alignment:
| Q |
20 |
attatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacattta |
119 |
Q |
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|||||||||||| | ||||||||||||||||| ||| ||||||||| |||| |||||||||| ||||||| | ||||||||||||||||| ||| | |
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| T |
48107777 |
attatagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattca |
48107678 |
T |
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| Q |
120 |
ttgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaac |
208 |
Q |
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|||||| |||||| ||||||||| ||||||||||||| ||||||| || || || ||||||| | ||||||||| |||||| |||||| |
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| T |
48107677 |
ttgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatactttttcaggtaac |
48107589 |
T |
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