View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_176 (Length: 228)
Name: NF1376_low_176
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_176 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 7958956 - 7959180
Alignment:
| Q |
7 |
cctcatacaaagaagtagcaggttggtggatcattacccccctgagagtctaaaagaataggggtttt---ttcctaatcttggattataaggtaaggca |
103 |
Q |
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| T |
7958956 |
cctcatacaaagaagtagcaggttggtggatcattacccccctgagagtctaacagaataggggtttttttttcctaatcttggattataaggtaaggca |
7959055 |
T |
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| Q |
104 |
tataaataagaaaaaagaaattgatgaaaatgaaacgcttaaatattgtgcaaattaatcatacctataagaccaattttacctataatctatttgtgag |
203 |
Q |
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| T |
7959056 |
tataaataagaaaaaagaaattgatgaaaatgaaacgcttaaatattgtgcaaattaatcatagctataagaccaattttacctataatctatttgtgag |
7959155 |
T |
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| Q |
204 |
atattaaaaacaagtaatctttgtt |
228 |
Q |
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| T |
7959156 |
atattaaaaacaagtaatctttgtt |
7959180 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 18332372 - 18332453
Alignment:
| Q |
7 |
cctcatacaaagaagtagcaggttggtggatcattaccc--ccctgagagtctaaaagaataggggttttttcctaatcttgga |
88 |
Q |
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| T |
18332372 |
cctcatacaaagaagtagcaggttgatggatcattaccctgagctgagagtctaacagaataggag--ttttcctaatcttgga |
18332453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 29800315 - 29800397
Alignment:
| Q |
7 |
cctcatacaaagaagtagcaggttggtggatcattaccc--ccctgagagtctaaaagaataggggttttttcctaatcttgga |
88 |
Q |
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| T |
29800315 |
cctcatacaaagaagtagcaagttgatggatcattaccctgagctgagagtctaacagaataggag-tttttcctaatcttgga |
29800397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 2399048 - 2398996
Alignment:
| Q |
73 |
ttttcctaatcttggattataaggtaaggcatataaataagaaaaaagaaatt |
125 |
Q |
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| T |
2399048 |
ttttcccaatcttagattataagatagggcatataaataggaaaaaagaaatt |
2398996 |
T |
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