View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376_low_18 (Length: 572)
Name: NF1376_low_18
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 39142353 - 39142884
Alignment:
| Q |
1 |
gcaacattttatgttttgtcaagaaaacagctgtcatggtgtttatgttttatgttttttcatttgttggaataaatgttctttatttgtagtttgaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39142353 |
gcaacattttatgttttgtcaagaaaacagctgtcatggtgtttatgttttatgttttttcatttgttggaataaatgttctttatttgtagtttgaaat |
39142452 |
T |
|
| Q |
101 |
catcatggtgatgnnnnnnnatttgttggaataaatgtatatgtatattactgcagtgatggattctgttttagtgattaggtggttaaacatctatttt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39142453 |
catcatggtgatgtttttttatttgttggaataaatgtatatgtatattactgcagtgatggattctgttttagtgattaggtggttaaacatctatttt |
39142552 |
T |
|
| Q |
201 |
cttggtgattatcatttgaatttgtttttgaaagttttgttat---gtagtatgatttgatgattgacctagaaatttaataaagggagcttcnnnnnnn |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39142553 |
cttggtgattatcatttgaatttgtttttgaaagtttagttatgtagtagtatcatttgatgattgacctagaaatttaataaaggaagcttctttttgt |
39142652 |
T |
|
| Q |
298 |
nnnnnnnnnnnnnnnnnnccacagggttctatggggtgtgaatgctagtgttgaagaatagaatggattttaagggttctgataactcagagttttgtgg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39142653 |
ttttgtttggttttttttccacagggttctatggggtgtgaatgctagtgttgaagaatagaatggattttaagggttctgataactcagagttttgtgg |
39142752 |
T |
|
| Q |
398 |
tgttggtgagaaaagtatatggcatccagtttcttatgacgacgcagattatgatgatgatgttcctttgtcaagaaggttatccatatggcatccagtt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39142753 |
tgttggtgagaaaagtatatggcatccagtttcttatgacgacgcagattatgatgatgatgttcctttgtcaagaaggttatccatatggcatccagtt |
39142852 |
T |
|
| Q |
498 |
tcttatgacgacgcagattatgatgatgatgt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39142853 |
tcttatgacgacgcagattatgatgatgatgt |
39142884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 39142838 - 39142906
Alignment:
| Q |
414 |
atatggcatccagtttcttatgacgacgcagattatgatgatgatgttcctttgtcaagaaggttatcc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39142838 |
atatggcatccagtttcttatgacgacgcagattatgatgatgatgttcctttgtcaagaaggttatcc |
39142906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 421 - 482
Target Start/End: Complemental strand, 39428114 - 39428053
Alignment:
| Q |
421 |
atccagtttcttatgacgacgcagattatgatgatgatgttcctttgtcaagaaggttatcc |
482 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39428114 |
atcctgtttcttatgacgatgctgattatgatgatgatgttcctttgtcaacaaggttatcc |
39428053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 39496079 - 39496033
Alignment:
| Q |
359 |
aatggattttaagggttctgataactcagagttttgtggtgttggtg |
405 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
39496079 |
aatggcttttaagggttctgataagtcaaagttctgtggtgttggtg |
39496033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University