View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_184 (Length: 214)

Name: NF1376_low_184
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_184
NF1376_low_184
[»] chr8 (1 HSPs)
chr8 (86-164)||(39974116-39974193)
[»] chr7 (1 HSPs)
chr7 (93-156)||(31515916-31515978)
[»] chr2 (1 HSPs)
chr2 (108-164)||(44439256-44439311)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 39974116 - 39974193
Alignment:
Q  86 attggtcttacctccagagtcaattctaacttgaaagctaaaaatggaagcttttgattttaaaattgattataacact 164  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39974116 attggtcttacctccagagtcaattctaacttgaa-gctaaaaatggaagcttttgattttaaaattgattataacact 39974193  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 31515916 - 31515978
Alignment:
Q  93 ttacctccagagtcaattctaacttgaaagctaaaaatggaagcttttgattttaaaattgatt 156  Q
    ||||||||||||||| |||||||||||| |||| | || |||||||||||||||||||||||||    
T  31515916 ttacctccagagtcacttctaacttgaa-gctatagattgaagcttttgattttaaaattgatt 31515978  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 44439256 - 44439311
Alignment:
Q  108 attctaacttgaaagctaaaaatggaagcttttgattttaaaattgattataacact 164  Q
    ||||||||||||| ||||||| | | ||||||||||| ||||||||||| |||||||    
T  44439256 attctaacttgaa-gctaaaatttggagcttttgattctaaaattgattttaacact 44439311  T

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