View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_2 (Length: 1063)

Name: NF1376_low_2
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_2
NF1376_low_2
[»] chr4 (11 HSPs)
chr4 (431-963)||(53121443-53121978)
chr4 (28-350)||(53121973-53122296)
chr4 (390-482)||(49863030-49863122)
chr4 (391-470)||(55957970-55958049)
chr4 (309-354)||(34968342-34968386)
chr4 (321-353)||(18004476-18004508)
chr4 (321-367)||(2228399-2228446)
chr4 (301-367)||(7967628-7967694)
chr4 (306-353)||(32923248-32923294)
chr4 (306-353)||(50380854-50380900)
chr4 (308-353)||(23673100-23673144)
[»] chr6 (5 HSPs)
chr6 (744-862)||(33805794-33805912)
chr6 (390-482)||(15572537-15572629)
chr6 (306-354)||(24438299-24438346)
chr6 (306-353)||(9311948-9311994)
chr6 (390-466)||(3005283-3005357)
[»] chr7 (7 HSPs)
chr7 (783-865)||(30952309-30952391)
chr7 (676-729)||(30952420-30952473)
chr7 (402-479)||(5780527-5780604)
chr7 (321-381)||(38553829-38553890)
chr7 (324-353)||(23374648-23374677)
chr7 (320-368)||(31885947-31885996)
chr7 (308-353)||(34000261-34000305)
[»] chr2 (8 HSPs)
chr2 (390-482)||(19315314-19315406)
chr2 (306-381)||(17736790-17736865)
chr2 (321-353)||(20644015-20644047)
chr2 (321-367)||(20517033-20517080)
chr2 (308-350)||(35727436-35727477)
chr2 (309-369)||(18324895-18324955)
chr2 (309-350)||(23250341-23250381)
chr2 (321-369)||(25274830-25274879)
[»] chr3 (8 HSPs)
chr3 (392-482)||(29400980-29401070)
chr3 (393-482)||(30058252-30058341)
chr3 (306-353)||(53633635-53633681)
chr3 (306-367)||(1757672-1757733)
chr3 (308-381)||(21245792-21245865)
chr3 (308-350)||(22486682-22486723)
chr3 (393-466)||(19340436-19340508)
chr3 (321-354)||(35208854-35208887)
[»] chr1 (10 HSPs)
chr1 (303-353)||(3573342-3573391)
chr1 (310-349)||(29059427-29059465)
chr1 (306-353)||(41182624-41182670)
chr1 (303-353)||(34083331-34083380)
chr1 (308-350)||(47719128-47719169)
chr1 (320-353)||(9413808-9413841)
chr1 (320-353)||(25271781-25271814)
chr1 (301-369)||(27853347-27853415)
chr1 (320-353)||(32826723-32826756)
chr1 (309-350)||(51067915-51067955)
[»] chr5 (3 HSPs)
chr5 (390-466)||(17816584-17816660)
chr5 (306-350)||(5107266-5107309)
chr5 (306-350)||(36623195-36623238)
[»] scaffold0027 (1 HSPs)
scaffold0027 (308-353)||(61588-61632)
[»] chr8 (4 HSPs)
chr8 (390-466)||(3887780-3887856)
chr8 (306-347)||(17806486-17806526)
chr8 (308-353)||(36919310-36919354)
chr8 (308-353)||(41625193-41625237)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 431 - 963
Target Start/End: Complemental strand, 53121978 - 53121443
Alignment:
Q  431 tatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgtacccacattgccacatgttgtggggg-tttaaggg-tgtataccaccta 528  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  53121978 tatatgccctatgtaggagggtattttggtaatgtgtaactaagaatatgtacccacattgccacatgttgtggggggtttaaggggtgtataccaccta 53121879  T
Q  529 tatgtgtctacgtgtataagcactcatgtgcaaaatatacatacgtatgacatgcagttacgaggacaacatataatagtgtgtgaaactctaaatgagt 628  Q
    | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53121878 tctgtgtctacgtgtataagcactcccgtgcaaaatatacatacgtatgacatgcagttacgaggacaacatataatagtgtgtgaaactcaaaatgagt 53121779  T
Q  629 ttcgtaaaaagtgactactatttgagatgctcttaggaagcaaaacaagagtaattatacccatacatcctaacgtgccatacaccatcctaccacttca 728  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  53121778 tccgtaaaaagtgactactatttgagatgctcttaggaagcaaaacaagagtaattatacccatacatcctaacgtcgcatacaccatcctaccacttca 53121679  T
Q  729 atattaca-nnnnnnnattaattattttggggtaattttgtccatttcnnnnnnncaaggggataaaattgtccaacacagtcaacaactgtcatcctct 827  Q
    ||||||||        ||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||| |||||||||    
T  53121678 atattacattttttttattaattattttggggtaattttgtccatttcaaaaaaacaaggggacaaaattgtccaacacagtcagcaactatcatcctct 53121579  T
Q  828 tttctctttcttctcctcaccgtccaacacaccaaccgccgccgtcgcgccaccacaaccgtgttaagttgtccaactgttacaacctctcttcttcctc 927  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53121578 tttctctttcttctcctcaccgtccaacacaccaaccgccgccgtcgcgccaccacaaccgtgttaagttgtccaactgttacaacctctcttcttcctc 53121479  T
Q  928 tttctcagacccacttttgttttctctctccatgga 963  Q
    ||||||||||||||||||||||||||||||||||||    
T  53121478 tttctcagacccacttttgttttctctctccatgga 53121443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 350
Target Start/End: Complemental strand, 53122296 - 53121973
Alignment:
Q  28 atctccaataatatcaacgagagttttacaacaaggtgaacctgtatcnnnnnnn--attggagaaagacctacattgagaatttgagtttcataaaatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  53122296 atctccaataatatcaacgagagttttacaacaaggtgaacctgtatctttttttttattggagaaagacctacattgagaatttgagtttcataaaatt 53122197  T
Q  126 ttatttgatgagaaaccttgattaagctacgataaaaattgaataaaacatttattttctttcttcaatcacaccaacgaatgcataaaaaagggaacaa 225  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53122196 ttatttgatgagaaaccttgattaggctacgataaaaattgaataaaacatttattttctttcttcaatcacaccaacgaatacataaaaaagggaacaa 53122097  T
Q  226 catttcatatcacaataatgtggattgtttaataatttgcataannnnnnnaccattagagcaaagggaaaatataggtactcgtgagcttaacttcagt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53122096 catttcatatcacaataatgtggattgtttaataatttgcataa-ttttttaccattagagcaaagggaaaatataggtactcgtgagcttagcttcagt 53121998  T
Q  326 tggtaagaataatgcataatatatg 350  Q
    || |||| | |||||||||||||||    
T  53121997 tgataaggacaatgcataatatatg 53121973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 482
Target Start/End: Original strand, 49863030 - 49863122
Alignment:
Q  390 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 482  Q
    |||||||||||||||||||||| |||||||||||| |||| || | ||||||| |  ||||||| |||||||||||||||| || ||||||||    
T  49863030 gggaaaatatagatagacactcttttttcataccattcttgtacacaccctatatgagagggtattttggtaatgtgtaacaaaaaatatgta 49863122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 391 - 470
Target Start/End: Complemental strand, 55958049 - 55957970
Alignment:
Q  391 ggaaaatatagatagacactcctttttca-taccactcttctatataccctatgtaggagggtaatttggtaatgtgtaac 470  Q
    |||||||||||||||||| |||||||||  |||||||||| || | |||| |||| |||||||| ||||||||||||||||    
T  55958049 ggaaaatatagatagaca-tcctttttccgtaccactcttgtacacacccaatgtgggagggtattttggtaatgtgtaac 55957970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 34968342 - 34968386
Alignment:
Q  309 gtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 354  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  34968342 gtgagcttaact-cagttggtaaaaataatgcataatatatgtaaa 34968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 18004476 - 18004508
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||||||||||||||||||||||||||||||    
T  18004476 tcagttggtaagaataatgcataatatatgtaa 18004508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 2228446 - 2228399
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 367  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||    
T  2228446 tcagttagtaagaataatgcataatatatgtaaggtctgggattcgaa 2228399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 7967694 - 7967628
Alignment:
Q  301 aggtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa-tctgggattcgaa 367  Q
    |||| |||||||||||||||| |||| ||||  ||||||||||||||||| ||| |||||||||||||    
T  7967694 aggtcctcgtgagcttaactt-agttcgtaaagataatgcataatatatgcaaagtctgggattcgaa 7967628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 32923294 - 32923248
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  32923294 ctcgtgagcttaact-cagttggtatgaacaatgcataatatatgtaa 32923248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 50380900 - 50380854
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  50380900 ctcgtgagcttaa-ttcagttggtatgaacaatgcataatatatgtaa 50380854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 23673100 - 23673144
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||    
T  23673100 cgtgagtttaact-cagttggtgagaataatgcataatatatgtaa 23673144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 9e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 744 - 862
Target Start/End: Original strand, 33805794 - 33805912
Alignment:
Q  744 attaattattttggggtaattttgtccatttcnnnnnnncaaggggataaaattgtccaacacagtcaacaactgtcatcctcttttctctttcttctcc 843  Q
    ||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  33805794 attaattattttggggtaattttgtccatttcaaaaaaacaaggggacaaaattgtccaacacagtcaacaattatcatcctcttttctctttcttctcc 33805893  T
Q  844 tcaccgtccaacacaccaa 862  Q
    |||  ||||||||||||||    
T  33805894 tcagagtccaacacaccaa 33805912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 390 - 482
Target Start/End: Complemental strand, 15572629 - 15572537
Alignment:
Q  390 gggaaaatatagatagacactcctttttc-ataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 482  Q
    ||||||||||||||||||| ||||||||| ||||||||||| || | || |||||| ||||| || |||||||||||||||  ||| |||||||    
T  15572629 gggaaaatatagatagaca-tcctttttccataccactcttgtacacacactatgtgggaggatattttggtaatgtgtaataaaggatatgta 15572537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 24438346 - 24438299
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 354  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  24438346 ctcgtgaacttaact-cagttggtaagaataatgcataatatatgtaaa 24438299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 9311994 - 9311948
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  9311994 ctcgtgagcttaact-cagttggtatgaataatacataatatatgtaa 9311948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 3005357 - 3005283
Alignment:
Q  390 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 466  Q
    ||||||||||| |||||||| | |||||||||| ||| || || ||||||  ||| |||||||| ||||||||||||    
T  3005357 gggaaaatataaatagacacccttttttcatactacttttgtacataccc--tgtgggagggtattttggtaatgtg 3005283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 5e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 783 - 865
Target Start/End: Complemental strand, 30952391 - 30952309
Alignment:
Q  783 caaggggataaaattgtccaacacagtcaacaactgtcatcctcttttctctttcttctcctcaccgtccaacacaccaaccg 865  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30952391 caaggggacaaaattgtccaacacagtcaacaactgtcatcctcttttctctttcttctcctcaccatccaacacaccaaccg 30952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 30952473 - 30952420
Alignment:
Q  676 agagtaattatacccatacatcctaacgtgccatacaccatcctaccacttcaa 729  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  30952473 agagtaattatacccatacatcctaacgtggcatgcaccatcctaccacttcaa 30952420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 5780604 - 5780527
Alignment:
Q  402 atagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatat 479  Q
    |||||||||| ||||||||||||||||| |||| ||||||| | |||||||| || ||||||||||||| ||| ||||    
T  5780604 atagacactcttttttcataccactcttgtatacaccctatatgggagggtatttcggtaatgtgtaacaaaggatat 5780527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 38553829 - 38553890
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 381  Q
    |||||||||||||| ||||||||||||||||||  | |||| |||||||||||| |||||||    
T  38553829 tcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaacctcggacatcaca 38553890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 23374677 - 23374648
Alignment:
Q  324 gttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||||||||||||||||||    
T  23374677 gttggtaagaataatgcataatatatgtaa 23374648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 31885996 - 31885947
Alignment:
Q  320 ttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaac 368  Q
    ||||||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  31885996 ttcagttggtatgaacaatgcataatatatgtaagatctggaattcgaac 31885947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 34000261 - 34000305
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||    
T  34000261 cgtgagcttaact-cagttgataaggataatgcataatatatgtaa 34000305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 7e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 390 - 482
Target Start/End: Original strand, 19315314 - 19315406
Alignment:
Q  390 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 482  Q
    |||||||||||||||||||| | |||| |||||||||||| |||| ||| |||||  ||||||| |||||||||||||||| |||||||||||    
T  19315314 gggaaaatatagatagacaccctttttccataccactcttgtatacaccttatgtgagagggtattttggtaatgtgtaacaaagaatatgta 19315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 17736790 - 17736865
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 381  Q
    |||||||||||| || ||||||||| ||| ||||||||| |||||||| |||  |||||||||||||||||| ||||    
T  17736790 ctcgtgagcttagct-cagttggtatgaacaatgcataaaatatgtaagatcatggattcgaacctcggccaccaca 17736865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 20644015 - 20644047
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||||||||||||||||||||||||||||||    
T  20644015 tcagttggtaagaataatgcataatatatgtaa 20644047  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 20517033 - 20517080
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 367  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||    
T  20517033 tcagttggtaagaacaatgcataatatatgtaagttctgggattcgaa 20517080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 35727436 - 35727477
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  35727436 cgtgagcttaact-cagttggtaagaacaatgcataatatatg 35727477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 18324955 - 18324895
Alignment:
Q  309 gtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 369  Q
    |||||||||||| ||||||||||| | ||||||||||||||| || |||| |||||||||||    
T  18324955 gtgagcttaact-cagttggtaaggacaatgcataatatatgcaagatctaggattcgaacc 18324895  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 23250381 - 23250341
Alignment:
Q  309 gtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  23250381 gtgagcttaact-cagttggtaagaacaatgcataatatatg 23250341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 25274879 - 25274830
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 369  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||||||||    
T  25274879 tcagttggtaagaacaatgcataatatatgtaaggtctggggttcgaacc 25274830  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 392 - 482
Target Start/End: Original strand, 29400980 - 29401070
Alignment:
Q  392 gaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 482  Q
    ||||||||||||||||||   ||||||||||||||||| || | ||| |||||  ||||||| |||||||||||||||| ||| |||||||    
T  29400980 gaaaatatagatagacaccattttttcataccactcttgtacacaccgtatgtgtgagggtattttggtaatgtgtaacaaaggatatgta 29401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 393 - 482
Target Start/End: Original strand, 30058252 - 30058341
Alignment:
Q  393 aaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 482  Q
    |||||||||||| |||  | |||||||||||| |||| || | ||||||||| |||||||| |||||||||||||||| ||| |||||||    
T  30058252 aaaatatagatatacatccttttttcataccaatcttatacacaccctatgtgggagggtattttggtaatgtgtaacaaaggatatgta 30058341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 53633681 - 53633635
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  53633681 ctcgtgagcttaact-cagttggtaaggataatgcataatatatgtaa 53633635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 1757733 - 1757672
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 367  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||| ||  |||||||||||||    
T  1757733 ctcgtgagcttaact-cagttggtaggaacaatgcataatatatgcaacgtctgggattcgaa 1757672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 21245792 - 21245865
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 381  Q
    |||||||||| ||| |||||||||| | ||||||||||||||||||  |||||| ||| ||||||| ||||||||    
T  21245792 cgtgagcttagctt-agttggtaaggacaatgcataatatatgtaaggtctggggttcaaacctcgaccatcaca 21245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 22486682 - 22486723
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  22486682 cgtgagcttaact-cagttggtaagaacaatgcataatatatg 22486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 19340436 - 19340508
Alignment:
Q  393 aaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 466  Q
    |||||||||||| |||  | ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||    
T  19340436 aaaatatagataaacatccttttttcataccactcttgtatacaccc-atgtgggaggttattttggtaatgtg 19340508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 35208887 - 35208854
Alignment:
Q  321 tcagttggtaagaataatgcataatatatgtaaa 354  Q
    ||||||||||||||||||| ||||||||||||||    
T  35208887 tcagttggtaagaataatgtataatatatgtaaa 35208854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 3573391 - 3573342
Alignment:
Q  303 gtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  3573391 gtactcgtgagcttaact-cagttggtaggaacaatgcataatatatgtaa 3573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 29059465 - 29059427
Alignment:
Q  310 tgagcttaacttcagttggtaagaataatgcataatatat 349  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29059465 tgagcttaa-ttcagttggtaagaataatgcataatatat 29059427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 41182670 - 41182624
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  41182670 ctcgtgagcttaact-cagttggtatgaataatgcataatatgtgtaa 41182624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 34083331 - 34083380
Alignment:
Q  303 gtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  34083331 gtactcatgagcttaact-cagatggtaagaacaatgcataatatatgtaa 34083380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 47719169 - 47719128
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  47719169 cgtgagcttaact-cagttggtaaggataatgcataatatatg 47719128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 9413808 - 9413841
Alignment:
Q  320 ttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||| ||||||||||||||||||    
T  9413808 ttcagttggtaagaacaatgcataatatatgtaa 9413841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 25271814 - 25271781
Alignment:
Q  320 ttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||||| ||||||||||||||||||    
T  25271814 ttcagttggtaagaacaatgcataatatatgtaa 25271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 27853347 - 27853415
Alignment:
Q  301 aggtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 369  Q
    |||| ||||||||||||||| ||||||||| ||| ||||||||||||||  || ||| ||||||||||||    
T  27853347 aggtcctcgtgagcttaact-cagttggtatgaacaatgcataatatatacaagatccgggattcgaacc 27853415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 32826756 - 32826723
Alignment:
Q  320 ttcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||||||||| |||||||||||||||||||||    
T  32826756 ttcagttggtaaaaataatgcataatatatgtaa 32826723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 51067955 - 51067915
Alignment:
Q  309 gtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  51067955 gtgagcttaact-cagttggtaagaataatacataatatatg 51067915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 17816584 - 17816660
Alignment:
Q  390 gggaaaatatagatagacactc-ctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 466  Q
    |||||||||||||||||||| |  |||||||||||||| || |||| |||| |||||||||| || ||||||||||||    
T  17816584 gggaaaatatagatagacaccctttttttcataccacttttgtatacaccc-atgtaggaggttattttggtaatgtg 17816660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 5107309 - 5107266
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  5107309 ctcgtgagcttaact-cagttggtatgaataatgcataatatatg 5107266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 36623238 - 36623195
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 350  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  36623238 ctcgtgagcttaact-cagttgataagaataatgcataatatatg 36623195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 61632 - 61588
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  61632 cgtgagcttaact-cagttggtaaggataatgcataatgtatgtaa 61588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 3887856 - 3887780
Alignment:
Q  390 gggaaaatatagatagaca-ctcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 466  Q
    ||||||||||||||||||| |   ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||    
T  3887856 gggaaaatatagatagacatcatttttttcataccactcttgtatacaccc-atgtgggaggttattttggtaatgtg 3887780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 17806526 - 17806486
Alignment:
Q  306 ctcgtgagcttaacttcagttggtaagaataatgcataatat 347  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  17806526 ctcgtgagattaact-cagttggtaagaataatgcataatat 17806486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 36919310 - 36919354
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  36919310 cgtgagcttaact-cagttggtaagaacaatgtataatatatgtaa 36919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 41625193 - 41625237
Alignment:
Q  308 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 353  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||    
T  41625193 cgtgagcttagct-cagttggtatgaataatgcataatatatgtaa 41625237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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