View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376_low_20 (Length: 571)
Name: NF1376_low_20
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_20 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Original strand, 36156 - 36658
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36156 |
gatggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagaga |
36255 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
36256 |
tgttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtt |
36355 |
T |
|
| Q |
216 |
tatggttctgttggttgtatcttggacaagggtcatttcatatatgaagatgtagtgtaatgactcagatcaaatgttaaatcaatgttatgaagtttat |
315 |
Q |
| |
|
||||||| |||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
36356 |
tatggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaagtttat |
36455 |
T |
|
| Q |
316 |
gacattgttgattgtaatgaaaagaagttgtgtttcttgaataaatgaaatgaagtttgtttgtcatgctattgttgtctgcttgttcattactttgtga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
36456 |
gacattgttgattgtaatgaaaagaagttgtgtttcttgaatcaatgaaatgaagtttgtttgtcatgctattgttgtatgcttgttcattagtttgtga |
36555 |
T |
|
| Q |
416 |
ttcactgttaaagtaatatgattatagttagcaaagttgtagacataattgtcttctttcataccaaaatgcaccaaaatggtcattactaacaccataa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
36556 |
ttcactgttaaagtaatatgattatagtaagcaaagttgtagtcataattatcttgtttcatagcaaaatgcaccaaaatggtcattactaacaccataa |
36655 |
T |
|
| Q |
516 |
tgt |
518 |
Q |
| |
|
||| |
|
|
| T |
36656 |
tgt |
36658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 23573463 - 23573754
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||||| |||||||||| | ||| |||| ||||| |||| |||||||||||||||||||||| |
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|
| T |
23573463 |
gatggacatcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagc |
23573562 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
|| |||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||| |
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|
| T |
23573563 |
tgctgaaagacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtt |
23573662 |
T |
|
| Q |
216 |
tatggttctgttggttgtatcttggacaagggtcatttcatatatgaagatgtagtgtaatgactcagatcaaatgttaaatcaatgttatgaa |
309 |
Q |
| |
|
|||| || ||||||||||||||| ||| | ||||| ||||| ||| |||||||||| || ||| | ||||||||||||||||||||||||| |
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|
| T |
23573663 |
tatgtttacattggttgtatcttgggcaatgttcattacatatctgacgatgtagtgtgat--ctcggttcaaatgttaaatcaatgttatgaa |
23573754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 31815098 - 31814942
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | |||| || ||||| |||||||| |||||||||| |
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|
| T |
31815098 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc |
31814999 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgga |
241 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
31814998 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgga |
31814942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 13507850 - 13507638
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
13507850 |
gatggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagaga |
13507751 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| || |||| |||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
13507750 |
tgccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtt |
13507651 |
T |
|
| Q |
216 |
tatggttctgttg |
228 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
13507650 |
tatgattttgttg |
13507638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 13507399 - 13507611
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| ||| |||||||||| || || ||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13507399 |
gatggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagaga |
13507498 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
|| |||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||| ||| | ||||||||||| |
|
|
| T |
13507499 |
tgctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtt |
13507598 |
T |
|
| Q |
216 |
tatggttctgttg |
228 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
13507599 |
tatggttttgttg |
13507611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 7799543 - 7799388
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7799543 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc |
7799444 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
240 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
7799443 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
7799388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 19398644 - 19398489
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||||| || |||||||||| |
|
|
| T |
19398644 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc |
19398545 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
240 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
19398544 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
19398489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 22059491 - 22059335
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
22059491 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
22059392 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgga |
241 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
22059391 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgga |
22059335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 3585 - 3430
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
3585 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
3486 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
240 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
3485 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
3430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
| Q |
79 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51253217 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
51253252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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