View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_23 (Length: 530)
Name: NF1376_low_23
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 30 - 519
Target Start/End: Original strand, 590838 - 591327
Alignment:
| Q |
30 |
ggaaatgctgctactgcagctatagagcagcaatggaatgtctatccaaaatatatgaagaacagtgatactcgaacgtcgaaaattgaggcttcattga |
129 |
Q |
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| T |
590838 |
ggaaatgctgctactgcagctatagagcagcaatggaatgtctatccaaaatatatgaagaatagtgatactcgaacgtcgaaaattgaggcttcattga |
590937 |
T |
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| Q |
130 |
acagtgacttgtatttaacacctaagaagaaaaatgaaggggaattctggttttcagatgatgctactagtttcttgatctcggaacattgtaaaagtac |
229 |
Q |
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| T |
590938 |
acagtgacttgtatttaacacctaagaagaaaaatgaaggggaattctggttttcagatgatgctactagtttcttgatctcggaacattgtaaaagtac |
591037 |
T |
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| Q |
230 |
atcgtctgattttgaaccacattggttgggagctgaaaaatctcagccttggtggcgcactacaggaaaagacgatttggcttccttggttgctaagaaa |
329 |
Q |
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| T |
591038 |
atcgtctgattttgaaccacattggttgggagctgaaaaatctcagccttggtggcgcactacaggaaaagacgatttggcttccttggttgctaagaaa |
591137 |
T |
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| Q |
330 |
tcatttgagtatgtcgagaactgcgatctcccagagccaaacattaagccttttaggaaaatacatactcttcagccaagagaaactgacaaggaggaga |
429 |
Q |
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| T |
591138 |
tcatttgagtatgtcgagaactgcgatctcccagagccaaacattaagccttttaggaaaatacatactcttcagccaagagaaactgacaaggaggaga |
591237 |
T |
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| Q |
430 |
atcaagtgtcgtccttgaaccaaaaattggagatgtgttcttccgattcgaatgcttgtacgtctacaaccttgacttctggctgttcat |
519 |
Q |
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| T |
591238 |
atcaagtgtcgtccttgaaccaaaaattggagatgtgttcttctgattcgaatggttgtacgtctacaaccttgacttctggctgttcat |
591327 |
T |
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